Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3776 and EX28DRAFT_3777 are separated by 28 nucleotides EX28DRAFT_3777 and EX28DRAFT_3778 overlap by 14 nucleotides EX28DRAFT_3778 and EX28DRAFT_3779 are separated by 196 nucleotides EX28DRAFT_3779 and EX28DRAFT_3780 overlap by 4 nucleotides
EX28DRAFT_3776: EX28DRAFT_3776 - tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain, at 459,794 to 461,083
_3776
EX28DRAFT_3777: EX28DRAFT_3777 - transcriptional antiterminator, Rof, at 461,112 to 461,372
_3777
EX28DRAFT_3778: EX28DRAFT_3778 - Uncharacterised protein family (UPF0253), at 461,359 to 461,559
_3778
EX28DRAFT_3779: EX28DRAFT_3779 - Uncharacterized protein conserved in bacteria, at 461,756 to 462,301
_3779
EX28DRAFT_3780: EX28DRAFT_3780 - RF-1 domain, at 462,298 to 462,720
_3780
Position (kb) 461
462 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 461.164 kb on - strand, within EX28DRAFT_3777 at 461.295 kb on + strand, within EX28DRAFT_3777 at 461.295 kb on + strand, within EX28DRAFT_3777 at 461.296 kb on - strand, within EX28DRAFT_3777 at 461.330 kb on - strand, within EX28DRAFT_3777 at 461.353 kb on + strand at 461.354 kb on - strand at 461.354 kb on - strand at 461.357 kb on + strand at 461.357 kb on + strand at 461.357 kb on + strand at 461.357 kb on + strand at 461.358 kb on - strand at 461.402 kb on + strand, within EX28DRAFT_3778 at 461.457 kb on + strand, within EX28DRAFT_3778 at 461.495 kb on + strand, within EX28DRAFT_3778 at 461.540 kb on - strand at 461.540 kb on - strand at 461.554 kb on - strand at 461.554 kb on - strand at 461.586 kb on - strand at 461.602 kb on - strand at 461.607 kb on + strand at 461.608 kb on - strand at 461.616 kb on - strand at 461.639 kb on + strand at 461.639 kb on - strand at 461.639 kb on - strand at 461.639 kb on - strand at 461.640 kb on + strand at 461.640 kb on + strand at 461.640 kb on + strand at 461.641 kb on - strand at 461.641 kb on - strand at 461.682 kb on + strand at 461.682 kb on + strand at 461.687 kb on - strand at 461.899 kb on + strand, within EX28DRAFT_3779 at 461.899 kb on + strand, within EX28DRAFT_3779 at 461.903 kb on + strand, within EX28DRAFT_3779 at 461.903 kb on + strand, within EX28DRAFT_3779 at 461.903 kb on + strand, within EX28DRAFT_3779 at 461.904 kb on - strand, within EX28DRAFT_3779 at 461.995 kb on - strand, within EX28DRAFT_3779 at 462.032 kb on - strand, within EX28DRAFT_3779 at 462.032 kb on - strand, within EX28DRAFT_3779 at 462.075 kb on - strand, within EX28DRAFT_3779 at 462.448 kb on + strand, within EX28DRAFT_3780 at 462.448 kb on + strand, within EX28DRAFT_3780 at 462.451 kb on + strand, within EX28DRAFT_3780 at 462.451 kb on + strand, within EX28DRAFT_3780 at 462.452 kb on - strand, within EX28DRAFT_3780 at 462.452 kb on - strand, within EX28DRAFT_3780 at 462.452 kb on - strand, within EX28DRAFT_3780 at 462.452 kb on - strand, within EX28DRAFT_3780 at 462.452 kb on - strand, within EX28DRAFT_3780 at 462.453 kb on + strand, within EX28DRAFT_3780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 461,164 - EX28DRAFT_3777 0.20 -3.9 461,295 + EX28DRAFT_3777 0.70 +0.3 461,295 + EX28DRAFT_3777 0.70 -1.9 461,296 - EX28DRAFT_3777 0.70 +0.4 461,330 - EX28DRAFT_3777 0.84 +0.8 461,353 + +0.7 461,354 - +0.1 461,354 - -1.7 461,357 + +1.9 461,357 + -3.2 461,357 + -1.2 461,357 + -0.6 461,358 - -1.1 461,402 + EX28DRAFT_3778 0.21 -1.7 461,457 + EX28DRAFT_3778 0.49 -1.5 461,495 + EX28DRAFT_3778 0.68 -0.1 461,540 - +0.5 461,540 - +0.0 461,554 - +0.1 461,554 - -0.2 461,586 - -0.2 461,602 - +0.8 461,607 + -0.8 461,608 - -1.5 461,616 - +0.2 461,639 + -0.7 461,639 - +0.5 461,639 - +0.9 461,639 - -0.3 461,640 + -0.2 461,640 + -0.3 461,640 + -0.6 461,641 - -0.4 461,641 - -0.2 461,682 + +1.1 461,682 + -0.2 461,687 - +0.1 461,899 + EX28DRAFT_3779 0.26 -0.9 461,899 + EX28DRAFT_3779 0.26 -0.7 461,903 + EX28DRAFT_3779 0.27 -1.1 461,903 + EX28DRAFT_3779 0.27 +0.1 461,903 + EX28DRAFT_3779 0.27 -0.9 461,904 - EX28DRAFT_3779 0.27 -0.3 461,995 - EX28DRAFT_3779 0.44 -0.1 462,032 - EX28DRAFT_3779 0.51 +0.0 462,032 - EX28DRAFT_3779 0.51 +0.5 462,075 - EX28DRAFT_3779 0.58 -0.6 462,448 + EX28DRAFT_3780 0.35 +0.4 462,448 + EX28DRAFT_3780 0.35 -1.1 462,451 + EX28DRAFT_3780 0.36 +0.4 462,451 + EX28DRAFT_3780 0.36 -0.4 462,452 - EX28DRAFT_3780 0.36 -0.0 462,452 - EX28DRAFT_3780 0.36 -0.5 462,452 - EX28DRAFT_3780 0.36 -0.5 462,452 - EX28DRAFT_3780 0.36 -0.0 462,452 - EX28DRAFT_3780 0.36 +1.3 462,453 + EX28DRAFT_3780 0.37 -4.2
Or see this region's nucleotide sequence