Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3711

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3710 and EX28DRAFT_3711 are separated by 14 nucleotidesEX28DRAFT_3711 and EX28DRAFT_3712 are separated by 175 nucleotides EX28DRAFT_3710: EX28DRAFT_3710 - pyruvate dehydrogenase E1 component, homodimeric type, at 380,247 to 382,910 _3710 EX28DRAFT_3711: EX28DRAFT_3711 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 382,925 to 384,820 _3711 EX28DRAFT_3712: EX28DRAFT_3712 - dihydrolipoamide dehydrogenase, at 384,996 to 386,420 _3712 Position (kb) 382 383 384 385Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 382.044 kb on + strand, within EX28DRAFT_3710at 382.282 kb on - strand, within EX28DRAFT_3710at 382.305 kb on + strand, within EX28DRAFT_3710at 382.306 kb on - strand, within EX28DRAFT_3710at 382.312 kb on - strand, within EX28DRAFT_3710at 382.312 kb on - strand, within EX28DRAFT_3710at 382.463 kb on - strand, within EX28DRAFT_3710at 382.515 kb on + strand, within EX28DRAFT_3710at 382.657 kb on - strandat 382.658 kb on + strandat 382.909 kb on - strandat 383.428 kb on - strand, within EX28DRAFT_3711at 383.900 kb on + strand, within EX28DRAFT_3711at 384.818 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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382,044 + EX28DRAFT_3710 0.67 -2.7
382,282 - EX28DRAFT_3710 0.76 -3.1
382,305 + EX28DRAFT_3710 0.77 -2.2
382,306 - EX28DRAFT_3710 0.77 -3.0
382,312 - EX28DRAFT_3710 0.78 -5.3
382,312 - EX28DRAFT_3710 0.78 -2.9
382,463 - EX28DRAFT_3710 0.83 -6.5
382,515 + EX28DRAFT_3710 0.85 -3.5
382,657 - -2.6
382,658 + -2.7
382,909 - -1.4
383,428 - EX28DRAFT_3711 0.27 -1.9
383,900 + EX28DRAFT_3711 0.51 -3.3
384,818 + +1.9

Or see this region's nucleotide sequence