Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3708 and EX28DRAFT_3709 are separated by 7 nucleotides EX28DRAFT_3709 and EX28DRAFT_3710 are separated by 3 nucleotides EX28DRAFT_3710 and EX28DRAFT_3711 are separated by 14 nucleotides
EX28DRAFT_3708: EX28DRAFT_3708 - Transcriptional regulators, at 379,359 to 380,123
_3708
EX28DRAFT_3709: EX28DRAFT_3709 - RNA, at 380,131 to 380,243
_3709
EX28DRAFT_3710: EX28DRAFT_3710 - pyruvate dehydrogenase E1 component, homodimeric type, at 380,247 to 382,910
_3710
EX28DRAFT_3711: EX28DRAFT_3711 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 382,925 to 384,820
_3711
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 379.288 kb on + strand at 379.390 kb on + strand at 379.923 kb on + strand, within EX28DRAFT_3708 at 380.138 kb on + strand at 380.424 kb on + strand at 380.424 kb on + strand at 380.856 kb on + strand, within EX28DRAFT_3710 at 381.244 kb on - strand, within EX28DRAFT_3710 at 381.505 kb on - strand, within EX28DRAFT_3710 at 381.561 kb on + strand, within EX28DRAFT_3710 at 381.562 kb on - strand, within EX28DRAFT_3710 at 381.861 kb on + strand, within EX28DRAFT_3710 at 381.913 kb on - strand, within EX28DRAFT_3710 at 381.915 kb on + strand, within EX28DRAFT_3710 at 382.044 kb on + strand, within EX28DRAFT_3710 at 382.282 kb on - strand, within EX28DRAFT_3710 at 382.305 kb on + strand, within EX28DRAFT_3710 at 382.306 kb on - strand, within EX28DRAFT_3710 at 382.312 kb on - strand, within EX28DRAFT_3710 at 382.312 kb on - strand, within EX28DRAFT_3710 at 382.463 kb on - strand, within EX28DRAFT_3710 at 382.515 kb on + strand, within EX28DRAFT_3710 at 382.657 kb on - strand at 382.658 kb on + strand at 382.909 kb on - strand at 383.428 kb on - strand, within EX28DRAFT_3711 at 383.900 kb on + strand, within EX28DRAFT_3711
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 379,288 + +0.2 379,390 + -0.9 379,923 + EX28DRAFT_3708 0.74 -0.6 380,138 + +3.5 380,424 + -2.7 380,424 + +0.9 380,856 + EX28DRAFT_3710 0.23 -4.4 381,244 - EX28DRAFT_3710 0.37 -0.1 381,505 - EX28DRAFT_3710 0.47 -2.4 381,561 + EX28DRAFT_3710 0.49 +0.9 381,562 - EX28DRAFT_3710 0.49 -2.2 381,861 + EX28DRAFT_3710 0.61 -4.4 381,913 - EX28DRAFT_3710 0.63 -2.8 381,915 + EX28DRAFT_3710 0.63 -1.9 382,044 + EX28DRAFT_3710 0.67 -2.7 382,282 - EX28DRAFT_3710 0.76 -3.1 382,305 + EX28DRAFT_3710 0.77 -2.2 382,306 - EX28DRAFT_3710 0.77 -3.0 382,312 - EX28DRAFT_3710 0.78 -5.3 382,312 - EX28DRAFT_3710 0.78 -2.9 382,463 - EX28DRAFT_3710 0.83 -6.5 382,515 + EX28DRAFT_3710 0.85 -3.5 382,657 - -2.6 382,658 + -2.7 382,909 - -1.4 383,428 - EX28DRAFT_3711 0.27 -1.9 383,900 + EX28DRAFT_3711 0.51 -3.3
Or see this region's nucleotide sequence