Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3700 and EX28DRAFT_3701 are separated by 10 nucleotides EX28DRAFT_3701 and EX28DRAFT_3702 are separated by 174 nucleotides
EX28DRAFT_3700: EX28DRAFT_3700 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 370,509 to 371,891
_3700
EX28DRAFT_3701: EX28DRAFT_3701 - prepilin-type N-terminal cleavage/methylation domain, at 371,902 to 372,339
_3701
EX28DRAFT_3702: EX28DRAFT_3702 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 372,514 to 373,407
_3702
Position (kb) 371
372
373 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 371.082 kb on + strand, within EX28DRAFT_3700 at 371.099 kb on + strand, within EX28DRAFT_3700 at 371.153 kb on + strand, within EX28DRAFT_3700 at 371.197 kb on + strand, within EX28DRAFT_3700 at 371.197 kb on + strand, within EX28DRAFT_3700 at 371.198 kb on - strand, within EX28DRAFT_3700 at 371.301 kb on - strand, within EX28DRAFT_3700 at 371.485 kb on - strand, within EX28DRAFT_3700 at 371.635 kb on + strand, within EX28DRAFT_3700 at 371.645 kb on + strand, within EX28DRAFT_3700 at 371.698 kb on - strand, within EX28DRAFT_3700 at 371.965 kb on - strand, within EX28DRAFT_3701 at 372.124 kb on - strand, within EX28DRAFT_3701 at 372.217 kb on - strand, within EX28DRAFT_3701 at 372.339 kb on + strand at 372.340 kb on - strand at 372.340 kb on - strand at 372.350 kb on + strand at 372.578 kb on + strand at 372.578 kb on + strand at 372.578 kb on + strand at 372.578 kb on + strand at 372.579 kb on - strand at 372.579 kb on - strand at 372.579 kb on - strand at 372.766 kb on + strand, within EX28DRAFT_3702 at 372.838 kb on - strand, within EX28DRAFT_3702 at 372.838 kb on - strand, within EX28DRAFT_3702 at 372.838 kb on - strand, within EX28DRAFT_3702 at 372.915 kb on - strand, within EX28DRAFT_3702 at 372.915 kb on - strand, within EX28DRAFT_3702 at 372.915 kb on - strand, within EX28DRAFT_3702
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 371,082 + EX28DRAFT_3700 0.41 +0.5 371,099 + EX28DRAFT_3700 0.43 +0.5 371,153 + EX28DRAFT_3700 0.47 -0.5 371,197 + EX28DRAFT_3700 0.50 +0.6 371,197 + EX28DRAFT_3700 0.50 +0.4 371,198 - EX28DRAFT_3700 0.50 +0.2 371,301 - EX28DRAFT_3700 0.57 +0.1 371,485 - EX28DRAFT_3700 0.71 -0.3 371,635 + EX28DRAFT_3700 0.81 -0.0 371,645 + EX28DRAFT_3700 0.82 -0.4 371,698 - EX28DRAFT_3700 0.86 -1.1 371,965 - EX28DRAFT_3701 0.14 -0.6 372,124 - EX28DRAFT_3701 0.51 -0.2 372,217 - EX28DRAFT_3701 0.72 -0.2 372,339 + +0.3 372,340 - -0.1 372,340 - +0.0 372,350 + +0.2 372,578 + -0.1 372,578 + -0.1 372,578 + +0.6 372,578 + +2.5 372,579 - -0.5 372,579 - -0.3 372,579 - +1.5 372,766 + EX28DRAFT_3702 0.28 +1.9 372,838 - EX28DRAFT_3702 0.36 +4.5 372,838 - EX28DRAFT_3702 0.36 +0.8 372,838 - EX28DRAFT_3702 0.36 -0.6 372,915 - EX28DRAFT_3702 0.45 -0.3 372,915 - EX28DRAFT_3702 0.45 +0.9 372,915 - EX28DRAFT_3702 0.45 -1.6
Or see this region's nucleotide sequence