Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3658

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3656 and EX28DRAFT_3657 are separated by 128 nucleotidesEX28DRAFT_3657 and EX28DRAFT_3658 are separated by 44 nucleotidesEX28DRAFT_3658 and EX28DRAFT_3659 overlap by 17 nucleotides EX28DRAFT_3656: EX28DRAFT_3656 - AraC-type DNA-binding domain-containing proteins, at 323,583 to 324,428 _3656 EX28DRAFT_3657: EX28DRAFT_3657 - Uncharacterized membrane-associated protein, at 324,557 to 325,324 _3657 EX28DRAFT_3658: EX28DRAFT_3658 - thiamine ABC transporter, ATP-binding protein, at 325,369 to 326,070 _3658 EX28DRAFT_3659: EX28DRAFT_3659 - thiamine ABC transporter, permease protein, at 326,054 to 327,664 _3659 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1at 324.481 kb on - strandat 324.556 kb on + strandat 324.556 kb on + strandat 324.557 kb on - strandat 324.580 kb on + strandat 324.580 kb on + strandat 324.580 kb on + strandat 324.581 kb on - strandat 324.595 kb on + strandat 324.599 kb on + strandat 324.600 kb on - strandat 324.600 kb on - strandat 324.799 kb on + strand, within EX28DRAFT_3657at 324.800 kb on - strand, within EX28DRAFT_3657at 325.019 kb on + strand, within EX28DRAFT_3657at 325.019 kb on + strand, within EX28DRAFT_3657at 325.020 kb on - strand, within EX28DRAFT_3657at 325.088 kb on - strand, within EX28DRAFT_3657at 325.190 kb on + strand, within EX28DRAFT_3657at 325.191 kb on - strand, within EX28DRAFT_3657at 325.503 kb on + strand, within EX28DRAFT_3658at 325.864 kb on - strand, within EX28DRAFT_3658at 325.944 kb on + strand, within EX28DRAFT_3658at 325.945 kb on - strand, within EX28DRAFT_3658at 325.945 kb on - strand, within EX28DRAFT_3658at 326.098 kb on + strandat 326.102 kb on + strandat 326.187 kb on + strandat 326.489 kb on + strand, within EX28DRAFT_3659at 326.870 kb on - strand, within EX28DRAFT_3659at 326.953 kb on - strand, within EX28DRAFT_3659at 326.974 kb on - strand, within EX28DRAFT_3659at 327.052 kb on + strand, within EX28DRAFT_3659

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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324,481 - -1.7
324,556 + +0.3
324,556 + -0.7
324,557 - +0.2
324,580 + -0.8
324,580 + +1.5
324,580 + +0.4
324,581 - -0.7
324,595 + +0.5
324,599 + +1.2
324,600 - -3.0
324,600 - -0.8
324,799 + EX28DRAFT_3657 0.32 +0.1
324,800 - EX28DRAFT_3657 0.32 -0.2
325,019 + EX28DRAFT_3657 0.60 +1.0
325,019 + EX28DRAFT_3657 0.60 +0.0
325,020 - EX28DRAFT_3657 0.60 +1.1
325,088 - EX28DRAFT_3657 0.69 +0.5
325,190 + EX28DRAFT_3657 0.82 -0.1
325,191 - EX28DRAFT_3657 0.83 +0.2
325,503 + EX28DRAFT_3658 0.19 +0.0
325,864 - EX28DRAFT_3658 0.71 -0.7
325,944 + EX28DRAFT_3658 0.82 -1.5
325,945 - EX28DRAFT_3658 0.82 +0.1
325,945 - EX28DRAFT_3658 0.82 -1.1
326,098 + -0.7
326,102 + +0.0
326,187 + -0.8
326,489 + EX28DRAFT_3659 0.27 -0.5
326,870 - EX28DRAFT_3659 0.51 -0.1
326,953 - EX28DRAFT_3659 0.56 -1.0
326,974 - EX28DRAFT_3659 0.57 -0.8
327,052 + EX28DRAFT_3659 0.62 +0.4

Or see this region's nucleotide sequence