Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3641 and EX28DRAFT_3642 are separated by 114 nucleotides EX28DRAFT_3642 and EX28DRAFT_3643 are separated by 39 nucleotides EX28DRAFT_3643 and EX28DRAFT_3644 are separated by 4 nucleotides EX28DRAFT_3644 and EX28DRAFT_3645 are separated by 3 nucleotides
EX28DRAFT_3641: EX28DRAFT_3641 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 302,827 to 304,692
_3641
EX28DRAFT_3642: EX28DRAFT_3642 - Dihydrofolate reductase, at 304,807 to 305,286
_3642
EX28DRAFT_3643: EX28DRAFT_3643 - Bis(5'nucleosyl)-tetraphosphatase, ApaH, at 305,326 to 306,174
_3643
EX28DRAFT_3644: EX28DRAFT_3644 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 306,179 to 306,556
_3644
EX28DRAFT_3645: EX28DRAFT_3645 - ribosomal RNA small subunit methyltransferase A, at 306,560 to 307,381
_3645
Position (kb) 305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 304.439 kb on - strand, within EX28DRAFT_3641 at 304.711 kb on - strand at 304.711 kb on - strand at 304.769 kb on + strand at 305.319 kb on + strand at 305.324 kb on + strand at 305.325 kb on - strand at 305.408 kb on - strand at 305.600 kb on - strand, within EX28DRAFT_3643 at 305.877 kb on + strand, within EX28DRAFT_3643 at 306.028 kb on + strand, within EX28DRAFT_3643 at 306.165 kb on - strand at 306.165 kb on - strand at 306.168 kb on + strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.313 kb on - strand, within EX28DRAFT_3644 at 306.313 kb on - strand, within EX28DRAFT_3644 at 306.318 kb on + strand, within EX28DRAFT_3644 at 306.465 kb on + strand, within EX28DRAFT_3644 at 306.514 kb on - strand, within EX28DRAFT_3644 at 306.524 kb on + strand at 306.525 kb on - strand at 306.537 kb on - strand at 306.561 kb on + strand at 306.886 kb on - strand, within EX28DRAFT_3645 at 306.886 kb on - strand, within EX28DRAFT_3645 at 306.995 kb on - strand, within EX28DRAFT_3645 at 306.997 kb on - strand, within EX28DRAFT_3645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 304,439 - EX28DRAFT_3641 0.86 -0.3 304,711 - +1.1 304,711 - -0.2 304,769 + +0.7 305,319 + +0.8 305,324 + +0.0 305,325 - +0.2 305,408 - +0.4 305,600 - EX28DRAFT_3643 0.32 -2.4 305,877 + EX28DRAFT_3643 0.65 -3.1 306,028 + EX28DRAFT_3643 0.83 -2.8 306,165 - -0.3 306,165 - -0.2 306,168 + -0.5 306,169 - -3.5 306,169 - -2.2 306,169 - -0.5 306,169 - +1.2 306,169 - -2.1 306,169 - -1.4 306,313 - EX28DRAFT_3644 0.35 -0.9 306,313 - EX28DRAFT_3644 0.35 -0.2 306,318 + EX28DRAFT_3644 0.37 -2.0 306,465 + EX28DRAFT_3644 0.76 -1.4 306,514 - EX28DRAFT_3644 0.89 -0.3 306,524 + -2.0 306,525 - -0.6 306,537 - +3.2 306,561 + -3.3 306,886 - EX28DRAFT_3645 0.40 -3.0 306,886 - EX28DRAFT_3645 0.40 -2.5 306,995 - EX28DRAFT_3645 0.53 -0.7 306,997 - EX28DRAFT_3645 0.53 -3.5
Or see this region's nucleotide sequence