Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3584

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3583 and EX28DRAFT_3584 are separated by 299 nucleotidesEX28DRAFT_3584 and EX28DRAFT_3585 are separated by 109 nucleotidesEX28DRAFT_3585 and EX28DRAFT_3586 are separated by 122 nucleotides EX28DRAFT_3583: EX28DRAFT_3583 - peptide chain release factor 3, at 239,913 to 241,502 _3583 EX28DRAFT_3584: EX28DRAFT_3584 - Predicted periplasmic or secreted lipoprotein, at 241,802 to 242,419 _3584 EX28DRAFT_3585: EX28DRAFT_3585 - Small integral membrane protein, at 242,529 to 242,708 _3585 EX28DRAFT_3586: EX28DRAFT_3586 - Predicted esterase of the alpha-beta hydrolase superfamily, at 242,831 to 243,883 _3586 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 240.881 kb on + strand, within EX28DRAFT_3583at 241.367 kb on + strandat 241.419 kb on + strandat 241.419 kb on + strandat 241.419 kb on + strandat 241.420 kb on - strandat 241.500 kb on + strandat 241.576 kb on + strandat 241.647 kb on + strandat 241.647 kb on + strandat 241.648 kb on - strandat 241.653 kb on + strandat 241.686 kb on + strandat 241.746 kb on + strandat 241.764 kb on - strandat 241.764 kb on - strandat 241.764 kb on - strandat 241.767 kb on + strandat 241.951 kb on + strand, within EX28DRAFT_3584at 241.957 kb on + strand, within EX28DRAFT_3584at 241.957 kb on + strand, within EX28DRAFT_3584at 241.958 kb on - strand, within EX28DRAFT_3584at 241.958 kb on - strand, within EX28DRAFT_3584at 241.958 kb on - strand, within EX28DRAFT_3584at 242.175 kb on + strand, within EX28DRAFT_3584at 242.175 kb on + strand, within EX28DRAFT_3584at 242.176 kb on - strand, within EX28DRAFT_3584at 242.176 kb on - strand, within EX28DRAFT_3584at 242.207 kb on + strand, within EX28DRAFT_3584at 242.227 kb on + strand, within EX28DRAFT_3584at 242.227 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.418 kb on - strandat 242.462 kb on + strandat 242.463 kb on - strandat 242.463 kb on - strandat 242.524 kb on + strandat 242.525 kb on - strandat 242.525 kb on - strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.534 kb on - strandat 242.546 kb on + strandat 242.547 kb on - strand, within EX28DRAFT_3585at 242.547 kb on - strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.566 kb on + strand, within EX28DRAFT_3585at 242.567 kb on - strand, within EX28DRAFT_3585at 242.567 kb on - strand, within EX28DRAFT_3585at 242.567 kb on - strand, within EX28DRAFT_3585at 242.621 kb on + strand, within EX28DRAFT_3585at 242.622 kb on - strand, within EX28DRAFT_3585at 242.663 kb on + strand, within EX28DRAFT_3585at 242.663 kb on + strand, within EX28DRAFT_3585at 242.697 kb on - strandat 242.718 kb on + strandat 242.718 kb on + strandat 242.803 kb on - strandat 242.999 kb on + strand, within EX28DRAFT_3586at 243.038 kb on + strand, within EX28DRAFT_3586at 243.039 kb on - strand, within EX28DRAFT_3586at 243.046 kb on + strand, within EX28DRAFT_3586at 243.047 kb on - strand, within EX28DRAFT_3586at 243.047 kb on - strand, within EX28DRAFT_3586at 243.260 kb on + strand, within EX28DRAFT_3586at 243.338 kb on + strand, within EX28DRAFT_3586at 243.338 kb on + strand, within EX28DRAFT_3586at 243.367 kb on + strand, within EX28DRAFT_3586at 243.368 kb on - strand, within EX28DRAFT_3586at 243.368 kb on - strand, within EX28DRAFT_3586at 243.371 kb on + strand, within EX28DRAFT_3586

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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240,881 + EX28DRAFT_3583 0.61 -0.8
241,367 + -3.0
241,419 + +0.6
241,419 + -0.2
241,419 + -0.7
241,420 - +1.2
241,500 + -0.8
241,576 + -0.2
241,647 + +1.1
241,647 + +1.8
241,648 - -0.2
241,653 + -0.5
241,686 + -0.7
241,746 + +1.9
241,764 - +0.1
241,764 - +0.3
241,764 - +1.1
241,767 + -0.9
241,951 + EX28DRAFT_3584 0.24 -0.4
241,957 + EX28DRAFT_3584 0.25 +0.2
241,957 + EX28DRAFT_3584 0.25 +0.2
241,958 - EX28DRAFT_3584 0.25 -2.2
241,958 - EX28DRAFT_3584 0.25 -0.4
241,958 - EX28DRAFT_3584 0.25 +0.5
242,175 + EX28DRAFT_3584 0.60 -1.0
242,175 + EX28DRAFT_3584 0.60 -0.1
242,176 - EX28DRAFT_3584 0.61 -0.3
242,176 - EX28DRAFT_3584 0.61 -0.7
242,207 + EX28DRAFT_3584 0.66 -2.4
242,227 + EX28DRAFT_3584 0.69 -0.9
242,227 + EX28DRAFT_3584 0.69 -0.4
242,289 + EX28DRAFT_3584 0.79 -0.2
242,289 + EX28DRAFT_3584 0.79 -0.5
242,289 + EX28DRAFT_3584 0.79 +2.0
242,289 + EX28DRAFT_3584 0.79 +0.7
242,418 - +0.0
242,462 + -0.4
242,463 - +0.7
242,463 - -0.7
242,524 + -0.4
242,525 - +1.9
242,525 - -0.4
242,528 + +0.2
242,528 + +0.8
242,528 + +0.4
242,528 + +0.4
242,529 - -0.3
242,529 - -1.2
242,529 - -0.6
242,534 - -0.2
242,546 + -0.1
242,547 - EX28DRAFT_3585 0.10 -0.1
242,547 - EX28DRAFT_3585 0.10 +1.3
242,564 + EX28DRAFT_3585 0.19 -0.3
242,564 + EX28DRAFT_3585 0.19 +0.3
242,564 + EX28DRAFT_3585 0.19 +2.3
242,564 + EX28DRAFT_3585 0.19 -0.3
242,566 + EX28DRAFT_3585 0.21 -0.1
242,567 - EX28DRAFT_3585 0.21 -0.3
242,567 - EX28DRAFT_3585 0.21 +0.2
242,567 - EX28DRAFT_3585 0.21 -0.2
242,621 + EX28DRAFT_3585 0.51 -1.1
242,622 - EX28DRAFT_3585 0.52 +0.1
242,663 + EX28DRAFT_3585 0.74 -0.7
242,663 + EX28DRAFT_3585 0.74 -0.1
242,697 - -0.3
242,718 + +0.4
242,718 + -0.6
242,803 - -0.3
242,999 + EX28DRAFT_3586 0.16 -0.7
243,038 + EX28DRAFT_3586 0.20 +0.1
243,039 - EX28DRAFT_3586 0.20 -0.2
243,046 + EX28DRAFT_3586 0.20 -0.3
243,047 - EX28DRAFT_3586 0.21 -0.3
243,047 - EX28DRAFT_3586 0.21 -0.4
243,260 + EX28DRAFT_3586 0.41 -0.7
243,338 + EX28DRAFT_3586 0.48 +0.9
243,338 + EX28DRAFT_3586 0.48 -0.1
243,367 + EX28DRAFT_3586 0.51 +0.2
243,368 - EX28DRAFT_3586 0.51 +0.2
243,368 - EX28DRAFT_3586 0.51 +1.0
243,371 + EX28DRAFT_3586 0.51 -0.2

Or see this region's nucleotide sequence