Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3508 and EX28DRAFT_3509 are separated by 88 nucleotides EX28DRAFT_3509 and EX28DRAFT_3510 are separated by 135 nucleotides EX28DRAFT_3510 and EX28DRAFT_3511 are separated by 61 nucleotides
EX28DRAFT_3508: EX28DRAFT_3508 - Lactoylglutathione lyase and related lyases, at 174,108 to 174,494
_3508
EX28DRAFT_3509: EX28DRAFT_3509 - Protease subunit of ATP-dependent Clp proteases, at 174,583 to 175,185
_3509
EX28DRAFT_3510: EX28DRAFT_3510 - Uncharacterized conserved protein, at 175,321 to 176,442
_3510
EX28DRAFT_3511: EX28DRAFT_3511 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 176,504 to 177,922
_3511
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1 at 174.359 kb on + strand, within EX28DRAFT_3508 at 174.363 kb on - strand, within EX28DRAFT_3508 at 174.363 kb on - strand, within EX28DRAFT_3508 at 174.400 kb on + strand, within EX28DRAFT_3508 at 174.489 kb on - strand at 174.494 kb on + strand at 174.495 kb on - strand at 174.495 kb on - strand at 174.543 kb on + strand at 174.578 kb on + strand at 174.578 kb on + strand at 174.589 kb on + strand at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.773 kb on - strand, within EX28DRAFT_3509 at 174.936 kb on + strand, within EX28DRAFT_3509 at 175.235 kb on - strand at 175.284 kb on - strand at 175.285 kb on + strand at 175.285 kb on + strand at 175.590 kb on + strand, within EX28DRAFT_3510 at 175.590 kb on + strand, within EX28DRAFT_3510 at 175.590 kb on + strand, within EX28DRAFT_3510 at 175.591 kb on - strand, within EX28DRAFT_3510 at 175.858 kb on + strand, within EX28DRAFT_3510 at 175.859 kb on - strand, within EX28DRAFT_3510 at 175.859 kb on - strand, within EX28DRAFT_3510 at 175.913 kb on - strand, within EX28DRAFT_3510 at 176.054 kb on - strand, within EX28DRAFT_3510 at 176.054 kb on - strand, within EX28DRAFT_3510 at 176.304 kb on - strand, within EX28DRAFT_3510 at 176.423 kb on - strand at 176.440 kb on + strand at 176.788 kb on - strand, within EX28DRAFT_3511 at 176.893 kb on + strand, within EX28DRAFT_3511 at 176.934 kb on + strand, within EX28DRAFT_3511 at 176.934 kb on + strand, within EX28DRAFT_3511 at 176.934 kb on + strand, within EX28DRAFT_3511 at 176.938 kb on - strand, within EX28DRAFT_3511 at 176.999 kb on - strand, within EX28DRAFT_3511 at 177.075 kb on + strand, within EX28DRAFT_3511
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 174,359 + EX28DRAFT_3508 0.65 +1.0 174,363 - EX28DRAFT_3508 0.66 -0.2 174,363 - EX28DRAFT_3508 0.66 +0.8 174,400 + EX28DRAFT_3508 0.75 +0.2 174,489 - +0.1 174,494 + -0.8 174,495 - -0.1 174,495 - +0.0 174,543 + +0.1 174,578 + -0.4 174,578 + -0.3 174,589 + -1.3 174,772 + EX28DRAFT_3509 0.31 +0.0 174,772 + EX28DRAFT_3509 0.31 -0.8 174,772 + EX28DRAFT_3509 0.31 +0.3 174,773 - EX28DRAFT_3509 0.32 -0.8 174,936 + EX28DRAFT_3509 0.59 +0.5 175,235 - -0.3 175,284 - +0.0 175,285 + +0.1 175,285 + +0.6 175,590 + EX28DRAFT_3510 0.24 +1.5 175,590 + EX28DRAFT_3510 0.24 +0.1 175,590 + EX28DRAFT_3510 0.24 +0.7 175,591 - EX28DRAFT_3510 0.24 +0.9 175,858 + EX28DRAFT_3510 0.48 +0.3 175,859 - EX28DRAFT_3510 0.48 +0.6 175,859 - EX28DRAFT_3510 0.48 -0.2 175,913 - EX28DRAFT_3510 0.53 -0.1 176,054 - EX28DRAFT_3510 0.65 -0.0 176,054 - EX28DRAFT_3510 0.65 +0.9 176,304 - EX28DRAFT_3510 0.88 +0.2 176,423 - -0.3 176,440 + +0.9 176,788 - EX28DRAFT_3511 0.20 +0.8 176,893 + EX28DRAFT_3511 0.27 -0.2 176,934 + EX28DRAFT_3511 0.30 +0.1 176,934 + EX28DRAFT_3511 0.30 +0.4 176,934 + EX28DRAFT_3511 0.30 +0.7 176,938 - EX28DRAFT_3511 0.31 +0.1 176,999 - EX28DRAFT_3511 0.35 +0.2 177,075 + EX28DRAFT_3511 0.40 -0.1
Or see this region's nucleotide sequence