Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3489

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3488 and EX28DRAFT_3489 are separated by 163 nucleotidesEX28DRAFT_3489 and EX28DRAFT_3490 are separated by 300 nucleotidesEX28DRAFT_3490 and EX28DRAFT_3491 are separated by 44 nucleotides EX28DRAFT_3488: EX28DRAFT_3488 - Integrase, at 150,995 to 152,245 _3488 EX28DRAFT_3489: EX28DRAFT_3489 - Predicted restriction endonuclease, at 152,409 to 153,278 _3489 EX28DRAFT_3490: EX28DRAFT_3490 - Toxin SymE, type I toxin-antitoxin system, at 153,579 to 154,034 _3490 EX28DRAFT_3491: EX28DRAFT_3491 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 154,079 to 155,080 _3491 Position (kb) 152 153 154Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 151.446 kb on - strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.478 kb on - strand, within EX28DRAFT_3488at 151.481 kb on + strand, within EX28DRAFT_3488at 151.482 kb on - strand, within EX28DRAFT_3488at 151.512 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.516 kb on - strand, within EX28DRAFT_3488at 151.516 kb on - strand, within EX28DRAFT_3488at 151.532 kb on + strand, within EX28DRAFT_3488at 151.533 kb on - strand, within EX28DRAFT_3488at 151.605 kb on + strand, within EX28DRAFT_3488at 151.605 kb on + strand, within EX28DRAFT_3488at 151.619 kb on - strand, within EX28DRAFT_3488at 151.719 kb on + strand, within EX28DRAFT_3488at 151.720 kb on - strand, within EX28DRAFT_3488at 151.775 kb on - strand, within EX28DRAFT_3488at 151.829 kb on + strand, within EX28DRAFT_3488at 151.830 kb on - strand, within EX28DRAFT_3488at 151.841 kb on + strand, within EX28DRAFT_3488at 151.902 kb on + strand, within EX28DRAFT_3488at 151.903 kb on - strand, within EX28DRAFT_3488at 151.903 kb on - strand, within EX28DRAFT_3488at 151.952 kb on + strand, within EX28DRAFT_3488at 151.953 kb on - strand, within EX28DRAFT_3488at 151.953 kb on - strand, within EX28DRAFT_3488at 151.977 kb on + strand, within EX28DRAFT_3488at 151.978 kb on - strand, within EX28DRAFT_3488at 151.978 kb on - strand, within EX28DRAFT_3488at 151.981 kb on + strand, within EX28DRAFT_3488at 151.994 kb on + strand, within EX28DRAFT_3488at 151.994 kb on + strand, within EX28DRAFT_3488at 152.003 kb on - strand, within EX28DRAFT_3488at 152.136 kb on + strandat 152.136 kb on + strandat 152.136 kb on + strandat 152.136 kb on + strandat 152.136 kb on + strandat 152.169 kb on + strandat 152.170 kb on - strandat 152.196 kb on + strandat 152.196 kb on + strandat 152.196 kb on + strandat 152.197 kb on - strandat 152.197 kb on - strandat 152.213 kb on + strandat 152.214 kb on - strandat 152.219 kb on + strandat 152.219 kb on + strandat 152.220 kb on - strandat 152.220 kb on - strandat 152.224 kb on - strandat 152.374 kb on - strandat 152.380 kb on - strandat 152.595 kb on - strand, within EX28DRAFT_3489at 152.721 kb on - strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.744 kb on - strand, within EX28DRAFT_3489at 152.744 kb on - strand, within EX28DRAFT_3489at 152.747 kb on + strand, within EX28DRAFT_3489at 152.747 kb on + strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.749 kb on + strand, within EX28DRAFT_3489at 152.749 kb on + strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.951 kb on + strand, within EX28DRAFT_3489at 152.952 kb on - strand, within EX28DRAFT_3489at 152.952 kb on - strand, within EX28DRAFT_3489at 152.969 kb on + strand, within EX28DRAFT_3489at 152.984 kb on + strand, within EX28DRAFT_3489at 153.011 kb on + strand, within EX28DRAFT_3489at 153.107 kb on + strand, within EX28DRAFT_3489at 153.301 kb on - strandat 153.301 kb on - strandat 153.431 kb on - strandat 153.435 kb on - strandat 153.451 kb on - strandat 153.488 kb on + strandat 153.489 kb on - strandat 153.781 kb on + strand, within EX28DRAFT_3490at 153.792 kb on + strand, within EX28DRAFT_3490at 153.792 kb on + strand, within EX28DRAFT_3490at 153.803 kb on - strand, within EX28DRAFT_3490at 153.896 kb on + strand, within EX28DRAFT_3490at 153.897 kb on - strand, within EX28DRAFT_3490at 153.897 kb on - strand, within EX28DRAFT_3490at 153.897 kb on - strand, within EX28DRAFT_3490at 153.926 kb on + strand, within EX28DRAFT_3490at 153.927 kb on - strand, within EX28DRAFT_3490at 153.942 kb on - strand, within EX28DRAFT_3490at 153.943 kb on + strand, within EX28DRAFT_3490at 153.947 kb on + strand, within EX28DRAFT_3490at 153.948 kb on - strand, within EX28DRAFT_3490at 154.007 kb on + strandat 154.039 kb on + strandat 154.040 kb on - strandat 154.068 kb on + strandat 154.068 kb on + strandat 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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151,446 - EX28DRAFT_3488 0.36 -0.2
151,446 - EX28DRAFT_3488 0.36 +0.0
151,446 - EX28DRAFT_3488 0.36 -2.3
151,478 - EX28DRAFT_3488 0.39 -0.0
151,481 + EX28DRAFT_3488 0.39 +2.9
151,482 - EX28DRAFT_3488 0.39 -0.7
151,512 + EX28DRAFT_3488 0.41 -0.6
151,515 + EX28DRAFT_3488 0.42 -0.1
151,515 + EX28DRAFT_3488 0.42 -1.0
151,515 + EX28DRAFT_3488 0.42 +0.1
151,515 + EX28DRAFT_3488 0.42 +0.4
151,515 + EX28DRAFT_3488 0.42 -0.6
151,516 - EX28DRAFT_3488 0.42 +0.3
151,516 - EX28DRAFT_3488 0.42 -0.0
151,532 + EX28DRAFT_3488 0.43 +1.3
151,533 - EX28DRAFT_3488 0.43 +0.3
151,605 + EX28DRAFT_3488 0.49 -0.7
151,605 + EX28DRAFT_3488 0.49 -2.8
151,619 - EX28DRAFT_3488 0.50 -0.0
151,719 + EX28DRAFT_3488 0.58 +0.6
151,720 - EX28DRAFT_3488 0.58 -0.1
151,775 - EX28DRAFT_3488 0.62 -0.4
151,829 + EX28DRAFT_3488 0.67 +0.7
151,830 - EX28DRAFT_3488 0.67 +0.4
151,841 + EX28DRAFT_3488 0.68 -0.0
151,902 + EX28DRAFT_3488 0.73 -0.1
151,903 - EX28DRAFT_3488 0.73 -0.2
151,903 - EX28DRAFT_3488 0.73 -0.1
151,952 + EX28DRAFT_3488 0.76 +0.1
151,953 - EX28DRAFT_3488 0.77 -0.1
151,953 - EX28DRAFT_3488 0.77 +0.2
151,977 + EX28DRAFT_3488 0.78 -0.5
151,978 - EX28DRAFT_3488 0.79 -0.2
151,978 - EX28DRAFT_3488 0.79 -1.1
151,981 + EX28DRAFT_3488 0.79 -0.6
151,994 + EX28DRAFT_3488 0.80 -0.0
151,994 + EX28DRAFT_3488 0.80 +0.2
152,003 - EX28DRAFT_3488 0.81 -1.0
152,136 + -0.2
152,136 + +0.4
152,136 + +0.6
152,136 + +0.1
152,136 + -1.6
152,169 + -1.1
152,170 - +0.4
152,196 + +0.4
152,196 + +4.5
152,196 + +1.6
152,197 - +1.2
152,197 - -0.3
152,213 + -0.4
152,214 - -1.4
152,219 + -0.3
152,219 + -4.8
152,220 - -0.3
152,220 - +0.8
152,224 - -0.4
152,374 - +0.1
152,380 - +1.1
152,595 - EX28DRAFT_3489 0.21 +0.1
152,721 - EX28DRAFT_3489 0.36 +1.9
152,743 + EX28DRAFT_3489 0.38 -0.4
152,743 + EX28DRAFT_3489 0.38 -1.8
152,743 + EX28DRAFT_3489 0.38 +0.7
152,744 - EX28DRAFT_3489 0.39 -0.2
152,744 - EX28DRAFT_3489 0.39 +0.1
152,747 + EX28DRAFT_3489 0.39 -1.1
152,747 + EX28DRAFT_3489 0.39 -0.9
152,748 - EX28DRAFT_3489 0.39 +2.5
152,748 - EX28DRAFT_3489 0.39 -0.3
152,748 - EX28DRAFT_3489 0.39 -0.6
152,749 + EX28DRAFT_3489 0.39 +0.1
152,749 + EX28DRAFT_3489 0.39 -2.1
152,750 - EX28DRAFT_3489 0.39 -0.2
152,750 - EX28DRAFT_3489 0.39 -0.9
152,750 - EX28DRAFT_3489 0.39 +1.3
152,757 + EX28DRAFT_3489 0.40 -0.1
152,757 + EX28DRAFT_3489 0.40 +1.0
152,757 + EX28DRAFT_3489 0.40 -0.4
152,844 - EX28DRAFT_3489 0.50 -0.5
152,844 - EX28DRAFT_3489 0.50 -0.2
152,844 - EX28DRAFT_3489 0.50 +0.2
152,951 + EX28DRAFT_3489 0.62 +1.3
152,952 - EX28DRAFT_3489 0.62 -0.4
152,952 - EX28DRAFT_3489 0.62 +0.2
152,969 + EX28DRAFT_3489 0.64 -0.4
152,984 + EX28DRAFT_3489 0.66 +0.5
153,011 + EX28DRAFT_3489 0.69 -0.0
153,107 + EX28DRAFT_3489 0.80 +0.4
153,301 - +0.3
153,301 - -0.9
153,431 - -0.1
153,435 - +0.5
153,451 - +1.7
153,488 + +0.2
153,489 - +0.1
153,781 + EX28DRAFT_3490 0.44 -0.6
153,792 + EX28DRAFT_3490 0.47 -0.4
153,792 + EX28DRAFT_3490 0.47 -0.2
153,803 - EX28DRAFT_3490 0.49 -0.5
153,896 + EX28DRAFT_3490 0.70 +0.3
153,897 - EX28DRAFT_3490 0.70 +1.7
153,897 - EX28DRAFT_3490 0.70 +0.4
153,897 - EX28DRAFT_3490 0.70 -2.8
153,926 + EX28DRAFT_3490 0.76 +0.1
153,927 - EX28DRAFT_3490 0.76 -0.4
153,942 - EX28DRAFT_3490 0.80 -2.3
153,943 + EX28DRAFT_3490 0.80 -0.4
153,947 + EX28DRAFT_3490 0.81 -0.2
153,948 - EX28DRAFT_3490 0.81 +0.1
154,007 + +0.6
154,039 + +0.1
154,040 - -0.1
154,068 + -0.6
154,068 + +0.5
154,197 + EX28DRAFT_3491 0.12 -0.5
154,197 + EX28DRAFT_3491 0.12 -0.3
154,197 + EX28DRAFT_3491 0.12 -0.3
154,197 + EX28DRAFT_3491 0.12 -0.8
154,197 + EX28DRAFT_3491 0.12 +0.3
154,197 + EX28DRAFT_3491 0.12 +0.5
154,197 + EX28DRAFT_3491 0.12 +0.4
154,198 - EX28DRAFT_3491 0.12 +0.3
154,198 - EX28DRAFT_3491 0.12 +0.5
154,198 - EX28DRAFT_3491 0.12 -0.6
154,198 - EX28DRAFT_3491 0.12 +0.6

Or see this region's nucleotide sequence