Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3446 and EX28DRAFT_3447 are separated by 85 nucleotides EX28DRAFT_3447 and EX28DRAFT_3448 are separated by 73 nucleotides EX28DRAFT_3448 and EX28DRAFT_3449 are separated by 71 nucleotides EX28DRAFT_3449 and EX28DRAFT_3450 are separated by 47 nucleotides
EX28DRAFT_3446: EX28DRAFT_3446 - aspartate carbamoyltransferase (EC 2.1.3.2), at 118,941 to 119,873
_3446
EX28DRAFT_3447: EX28DRAFT_3447 - PyrBI operon leader peptide, at 119,959 to 120,039
_3447
EX28DRAFT_3448: EX28DRAFT_3448 - transcriptional regulator, ArgR family, at 120,113 to 120,601
_3448
EX28DRAFT_3449: EX28DRAFT_3449 - Predicted membrane protein, at 120,673 to 122,076
_3449
EX28DRAFT_3450: EX28DRAFT_3450 - ornithine carbamoyltransferase, at 122,124 to 123,128
_3450
Position (kb) 120
121
122
123 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 119.878 kb on - strand at 120.043 kb on - strand at 120.043 kb on - strand at 120.085 kb on - strand at 120.105 kb on + strand at 120.111 kb on + strand at 120.146 kb on - strand at 120.193 kb on + strand, within EX28DRAFT_3448 at 120.247 kb on + strand, within EX28DRAFT_3448 at 120.248 kb on - strand, within EX28DRAFT_3448 at 120.281 kb on - strand, within EX28DRAFT_3448 at 120.293 kb on - strand, within EX28DRAFT_3448 at 120.337 kb on + strand, within EX28DRAFT_3448 at 120.381 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.514 kb on - strand, within EX28DRAFT_3448 at 120.514 kb on - strand, within EX28DRAFT_3448 at 120.514 kb on - strand, within EX28DRAFT_3448 at 120.554 kb on + strand at 120.554 kb on + strand at 120.555 kb on - strand at 120.555 kb on - strand at 120.555 kb on - strand at 120.592 kb on + strand at 120.592 kb on + strand at 120.592 kb on + strand at 120.592 kb on + strand at 120.617 kb on - strand at 120.761 kb on + strand at 120.761 kb on + strand at 120.971 kb on + strand, within EX28DRAFT_3449 at 121.637 kb on + strand, within EX28DRAFT_3449 at 121.637 kb on + strand, within EX28DRAFT_3449 at 122.049 kb on - strand at 122.088 kb on + strand at 122.126 kb on - strand at 122.366 kb on - strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.644 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.868 kb on - strand, within EX28DRAFT_3450 at 122.899 kb on + strand, within EX28DRAFT_3450
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 119,878 - -2.1 120,043 - +0.1 120,043 - +0.9 120,085 - -0.2 120,105 + -1.3 120,111 + +1.6 120,146 - -0.1 120,193 + EX28DRAFT_3448 0.16 -0.6 120,247 + EX28DRAFT_3448 0.27 +0.8 120,248 - EX28DRAFT_3448 0.28 +0.6 120,281 - EX28DRAFT_3448 0.34 +0.7 120,293 - EX28DRAFT_3448 0.37 -0.6 120,337 + EX28DRAFT_3448 0.46 -0.6 120,381 + EX28DRAFT_3448 0.55 +0.0 120,513 + EX28DRAFT_3448 0.82 +0.5 120,513 + EX28DRAFT_3448 0.82 -0.2 120,513 + EX28DRAFT_3448 0.82 -0.7 120,513 + EX28DRAFT_3448 0.82 -1.0 120,514 - EX28DRAFT_3448 0.82 -0.0 120,514 - EX28DRAFT_3448 0.82 -0.3 120,514 - EX28DRAFT_3448 0.82 -0.6 120,554 + -1.0 120,554 + -0.6 120,555 - -0.1 120,555 - -0.1 120,555 - -0.1 120,592 + +0.2 120,592 + +0.2 120,592 + -1.9 120,592 + +0.3 120,617 - +0.1 120,761 + -1.1 120,761 + -0.6 120,971 + EX28DRAFT_3449 0.21 -4.1 121,637 + EX28DRAFT_3449 0.69 -2.6 121,637 + EX28DRAFT_3449 0.69 +0.4 122,049 - -0.2 122,088 + -1.4 122,126 - +0.0 122,366 - EX28DRAFT_3450 0.24 -0.8 122,417 + EX28DRAFT_3450 0.29 -0.0 122,417 + EX28DRAFT_3450 0.29 -0.6 122,644 + EX28DRAFT_3450 0.52 -1.1 122,824 + EX28DRAFT_3450 0.70 +0.9 122,824 + EX28DRAFT_3450 0.70 -0.1 122,824 + EX28DRAFT_3450 0.70 -0.4 122,824 + EX28DRAFT_3450 0.70 +0.2 122,824 + EX28DRAFT_3450 0.70 +0.4 122,825 - EX28DRAFT_3450 0.70 -0.5 122,825 - EX28DRAFT_3450 0.70 -0.0 122,825 - EX28DRAFT_3450 0.70 -0.8 122,868 - EX28DRAFT_3450 0.74 -0.2 122,899 + EX28DRAFT_3450 0.77 +0.4
Or see this region's nucleotide sequence