Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3367 and EX28DRAFT_3368 overlap by 8 nucleotides EX28DRAFT_3368 and EX28DRAFT_3369 are separated by 85 nucleotides EX28DRAFT_3369 and EX28DRAFT_3370 are separated by 74 nucleotides
EX28DRAFT_3367: EX28DRAFT_3367 - DNA mismatch repair protein MutL, at 34,716 to 36,560
_3367
EX28DRAFT_3368: EX28DRAFT_3368 - tRNA dimethylallyltransferase, at 36,553 to 37,503
_3368
EX28DRAFT_3369: EX28DRAFT_3369 - RNA chaperone Hfq, at 37,589 to 37,900
_3369
EX28DRAFT_3370: EX28DRAFT_3370 - GTP-binding protein HflX, at 37,975 to 39,255
_3370
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 35.586 kb on + strand, within EX28DRAFT_3367 at 35.586 kb on + strand, within EX28DRAFT_3367 at 35.587 kb on - strand, within EX28DRAFT_3367 at 35.617 kb on + strand, within EX28DRAFT_3367 at 35.618 kb on - strand, within EX28DRAFT_3367 at 35.618 kb on - strand, within EX28DRAFT_3367 at 35.678 kb on + strand, within EX28DRAFT_3367 at 35.679 kb on - strand, within EX28DRAFT_3367 at 35.928 kb on + strand, within EX28DRAFT_3367 at 36.187 kb on + strand, within EX28DRAFT_3367 at 36.208 kb on + strand, within EX28DRAFT_3367 at 36.509 kb on - strand at 36.511 kb on + strand at 36.512 kb on - strand at 37.322 kb on - strand, within EX28DRAFT_3368 at 37.342 kb on + strand, within EX28DRAFT_3368 at 37.509 kb on + strand at 37.509 kb on + strand at 37.509 kb on + strand at 37.522 kb on + strand at 37.555 kb on + strand at 37.831 kb on + strand, within EX28DRAFT_3369 at 37.988 kb on - strand at 38.023 kb on + strand at 38.024 kb on - strand at 38.043 kb on + strand at 38.044 kb on - strand at 38.121 kb on + strand, within EX28DRAFT_3370 at 38.122 kb on - strand, within EX28DRAFT_3370 at 38.140 kb on + strand, within EX28DRAFT_3370 at 38.157 kb on + strand, within EX28DRAFT_3370 at 38.297 kb on + strand, within EX28DRAFT_3370 at 38.298 kb on - strand, within EX28DRAFT_3370 at 38.322 kb on + strand, within EX28DRAFT_3370
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 35,586 + EX28DRAFT_3367 0.47 +0.4 35,586 + EX28DRAFT_3367 0.47 -0.7 35,587 - EX28DRAFT_3367 0.47 -1.5 35,617 + EX28DRAFT_3367 0.49 -1.0 35,618 - EX28DRAFT_3367 0.49 +0.0 35,618 - EX28DRAFT_3367 0.49 -0.8 35,678 + EX28DRAFT_3367 0.52 +0.0 35,679 - EX28DRAFT_3367 0.52 -0.2 35,928 + EX28DRAFT_3367 0.66 +0.6 36,187 + EX28DRAFT_3367 0.80 -0.5 36,208 + EX28DRAFT_3367 0.81 -0.4 36,509 - -0.1 36,511 + +0.2 36,512 - -0.3 37,322 - EX28DRAFT_3368 0.81 -1.4 37,342 + EX28DRAFT_3368 0.83 -1.7 37,509 + -0.4 37,509 + -1.1 37,509 + -0.1 37,522 + -0.3 37,555 + -2.0 37,831 + EX28DRAFT_3369 0.78 -0.7 37,988 - -1.0 38,023 + -0.1 38,024 - -2.0 38,043 + -0.6 38,044 - -0.0 38,121 + EX28DRAFT_3370 0.11 -0.2 38,122 - EX28DRAFT_3370 0.11 -0.6 38,140 + EX28DRAFT_3370 0.13 -0.3 38,157 + EX28DRAFT_3370 0.14 -0.7 38,297 + EX28DRAFT_3370 0.25 +0.3 38,298 - EX28DRAFT_3370 0.25 -1.5 38,322 + EX28DRAFT_3370 0.27 -0.2
Or see this region's nucleotide sequence