Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3284 and EX28DRAFT_3285 are separated by 56 nucleotides EX28DRAFT_3285 and EX28DRAFT_3286 are separated by 397 nucleotides
EX28DRAFT_3284: EX28DRAFT_3284 - periplasmic serine pepetdase DegS, at 581,655 to 582,722
_3284
EX28DRAFT_3285: EX28DRAFT_3285 - malate dehydrogenase (NAD) (EC 1.1.1.37), at 582,779 to 583,717
_3285
EX28DRAFT_3286: EX28DRAFT_3286 - transcriptional regulator, ArgR family, at 584,115 to 584,585
_3286
Position (kb) 582
583
584 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 582.746 kb on - strand at 582.746 kb on - strand at 582.883 kb on + strand, within EX28DRAFT_3285 at 582.960 kb on + strand, within EX28DRAFT_3285 at 582.961 kb on - strand, within EX28DRAFT_3285 at 582.961 kb on - strand, within EX28DRAFT_3285 at 583.174 kb on + strand, within EX28DRAFT_3285 at 583.175 kb on - strand, within EX28DRAFT_3285 at 583.206 kb on - strand, within EX28DRAFT_3285 at 583.620 kb on + strand, within EX28DRAFT_3285 at 583.621 kb on - strand, within EX28DRAFT_3285 at 583.662 kb on - strand at 583.733 kb on - strand at 583.733 kb on - strand at 583.739 kb on - strand at 583.743 kb on + strand at 583.743 kb on + strand at 583.744 kb on - strand at 583.744 kb on - strand at 583.748 kb on - strand at 583.754 kb on - strand at 583.785 kb on + strand at 583.786 kb on - strand at 583.834 kb on - strand at 583.892 kb on + strand at 583.893 kb on - strand at 583.893 kb on - strand at 583.936 kb on + strand at 584.018 kb on + strand at 584.018 kb on + strand at 584.025 kb on - strand at 584.100 kb on + strand at 584.100 kb on + strand at 584.101 kb on - strand at 584.101 kb on - strand at 584.114 kb on + strand at 584.147 kb on - strand at 584.313 kb on + strand, within EX28DRAFT_3286
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 582,746 - -0.1 582,746 - +0.7 582,883 + EX28DRAFT_3285 0.11 -3.8 582,960 + EX28DRAFT_3285 0.19 -2.5 582,961 - EX28DRAFT_3285 0.19 -5.0 582,961 - EX28DRAFT_3285 0.19 -4.2 583,174 + EX28DRAFT_3285 0.42 -2.9 583,175 - EX28DRAFT_3285 0.42 -3.0 583,206 - EX28DRAFT_3285 0.45 -2.4 583,620 + EX28DRAFT_3285 0.90 -4.0 583,621 - EX28DRAFT_3285 0.90 -3.4 583,662 - -3.1 583,733 - -0.5 583,733 - -0.4 583,739 - -0.1 583,743 + -0.5 583,743 + -3.3 583,744 - -0.2 583,744 - +1.2 583,748 - -0.1 583,754 - +0.4 583,785 + -1.4 583,786 - -0.3 583,834 - -0.1 583,892 + -1.0 583,893 - -0.3 583,893 - -1.2 583,936 + -1.4 584,018 + +3.0 584,018 + -2.6 584,025 - -0.1 584,100 + -0.4 584,100 + +0.3 584,101 - -1.1 584,101 - -3.3 584,114 + -1.3 584,147 - -0.9 584,313 + EX28DRAFT_3286 0.42 +1.5
Or see this region's nucleotide sequence