Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3256 and EX28DRAFT_3257 are separated by 22 nucleotides EX28DRAFT_3257 and EX28DRAFT_3258 are separated by 82 nucleotides EX28DRAFT_3258 and EX28DRAFT_3259 are separated by 45 nucleotides
EX28DRAFT_3256: EX28DRAFT_3256 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 548,139 to 549,572
_3256
EX28DRAFT_3257: EX28DRAFT_3257 - ribosomal subunit interface protein, at 549,595 to 549,882
_3257
EX28DRAFT_3258: EX28DRAFT_3258 - PTS IIA-like nitrogen-regulatory protein PtsN, at 549,965 to 550,456
_3258
EX28DRAFT_3259: EX28DRAFT_3259 - Predicted P-loop-containing kinase, at 550,502 to 551,356
_3259
Position (kb) 549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.595 kb on - strand at 549.595 kb on - strand at 549.682 kb on + strand, within EX28DRAFT_3257 at 549.682 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.707 kb on - strand, within EX28DRAFT_3257 at 549.707 kb on - strand, within EX28DRAFT_3257 at 549.708 kb on + strand, within EX28DRAFT_3257 at 549.708 kb on + strand, within EX28DRAFT_3257 at 549.709 kb on - strand, within EX28DRAFT_3257 at 549.738 kb on + strand, within EX28DRAFT_3257 at 549.738 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.806 kb on - strand, within EX28DRAFT_3257 at 549.806 kb on - strand, within EX28DRAFT_3257 at 549.858 kb on + strand at 549.880 kb on + strand at 549.880 kb on + strand at 549.881 kb on - strand at 549.947 kb on + strand at 550.413 kb on - strand at 550.420 kb on + strand at 550.676 kb on - strand, within EX28DRAFT_3259
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 549,595 - -1.0 549,595 - -0.2 549,682 + EX28DRAFT_3257 0.30 +0.2 549,682 + EX28DRAFT_3257 0.30 +0.1 549,706 + EX28DRAFT_3257 0.39 -0.3 549,706 + EX28DRAFT_3257 0.39 -0.2 549,706 + EX28DRAFT_3257 0.39 -0.7 549,706 + EX28DRAFT_3257 0.39 +0.3 549,706 + EX28DRAFT_3257 0.39 -0.5 549,707 - EX28DRAFT_3257 0.39 -0.8 549,707 - EX28DRAFT_3257 0.39 -0.5 549,708 + EX28DRAFT_3257 0.39 -0.4 549,708 + EX28DRAFT_3257 0.39 -0.2 549,709 - EX28DRAFT_3257 0.40 -0.9 549,738 + EX28DRAFT_3257 0.50 +1.0 549,738 + EX28DRAFT_3257 0.50 -0.4 549,805 + EX28DRAFT_3257 0.73 -0.4 549,805 + EX28DRAFT_3257 0.73 -0.7 549,805 + EX28DRAFT_3257 0.73 +1.3 549,806 - EX28DRAFT_3257 0.73 -0.8 549,806 - EX28DRAFT_3257 0.73 +0.3 549,858 + +0.3 549,880 + +1.9 549,880 + -0.2 549,881 - -2.3 549,947 + +0.2 550,413 - -0.8 550,420 + -0.4 550,676 - EX28DRAFT_3259 0.20 -2.4
Or see this region's nucleotide sequence