Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3229 and EX28DRAFT_3230 are separated by 93 nucleotides EX28DRAFT_3230 and EX28DRAFT_3231 are separated by 88 nucleotides EX28DRAFT_3231 and EX28DRAFT_3232 are separated by 151 nucleotides EX28DRAFT_3232 and EX28DRAFT_3233 are separated by 74 nucleotides EX28DRAFT_3233 and EX28DRAFT_3234 are separated by 30 nucleotides
EX28DRAFT_3229: EX28DRAFT_3229 - ATP-dependent metalloprotease FtsH, at 526,923 to 528,866
_3229
EX28DRAFT_3230: EX28DRAFT_3230 - cell division protein FtsJ, at 528,960 to 529,586
_3230
EX28DRAFT_3231: EX28DRAFT_3231 - putative RNA-binding protein, YhbY family, at 529,675 to 530,007
_3231
EX28DRAFT_3232: EX28DRAFT_3232 - transcription elongation factor GreA, at 530,159 to 530,635
_3232
EX28DRAFT_3233: EX28DRAFT_3233 - RNA, at 530,710 to 530,833
_3233
EX28DRAFT_3234: EX28DRAFT_3234 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 530,864 to 532,297
_3234
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 528.917 kb on - strand at 529.729 kb on - strand, within EX28DRAFT_3231 at 529.933 kb on - strand, within EX28DRAFT_3231 at 529.933 kb on - strand, within EX28DRAFT_3231 at 529.951 kb on - strand, within EX28DRAFT_3231 at 529.978 kb on - strand at 530.093 kb on + strand at 530.144 kb on + strand at 530.160 kb on + strand at 530.161 kb on - strand at 530.368 kb on + strand, within EX28DRAFT_3232 at 530.390 kb on - strand, within EX28DRAFT_3232 at 530.444 kb on - strand, within EX28DRAFT_3232 at 530.450 kb on - strand, within EX28DRAFT_3232 at 530.453 kb on - strand, within EX28DRAFT_3232 at 530.613 kb on - strand at 530.613 kb on - strand at 530.641 kb on - strand at 530.642 kb on + strand at 530.643 kb on - strand at 530.765 kb on + strand, within EX28DRAFT_3233 at 530.790 kb on - strand, within EX28DRAFT_3233 at 530.826 kb on - strand at 530.826 kb on - strand at 530.829 kb on - strand at 530.905 kb on - strand at 530.939 kb on + strand at 530.940 kb on - strand at 530.940 kb on - strand at 530.944 kb on + strand at 530.944 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 528,917 - -2.2 529,729 - EX28DRAFT_3231 0.16 -3.1 529,933 - EX28DRAFT_3231 0.77 -0.7 529,933 - EX28DRAFT_3231 0.77 -0.0 529,951 - EX28DRAFT_3231 0.83 -0.3 529,978 - -0.1 530,093 + -0.8 530,144 + -1.0 530,160 + -0.0 530,161 - +0.2 530,368 + EX28DRAFT_3232 0.44 -0.1 530,390 - EX28DRAFT_3232 0.48 +0.6 530,444 - EX28DRAFT_3232 0.60 +0.0 530,450 - EX28DRAFT_3232 0.61 -0.9 530,453 - EX28DRAFT_3232 0.62 -0.5 530,613 - -2.1 530,613 - -1.4 530,641 - +0.2 530,642 + -0.6 530,643 - -0.2 530,765 + EX28DRAFT_3233 0.44 -0.7 530,790 - EX28DRAFT_3233 0.65 -0.2 530,826 - +0.2 530,826 - -0.3 530,829 - -1.6 530,905 - -0.4 530,939 + -2.7 530,940 - +0.0 530,940 - -0.8 530,944 + +0.5 530,944 + +0.0
Or see this region's nucleotide sequence