Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3213 and EX28DRAFT_3214 are separated by 62 nucleotides EX28DRAFT_3214 and EX28DRAFT_3215 are separated by 16 nucleotides EX28DRAFT_3215 and EX28DRAFT_3216 overlap by 57 nucleotides EX28DRAFT_3216 and EX28DRAFT_3217 are separated by 96 nucleotides EX28DRAFT_3217 and EX28DRAFT_3218 overlap by 1 nucleotides EX28DRAFT_3218 and EX28DRAFT_3219 are separated by 89 nucleotides
EX28DRAFT_3213: EX28DRAFT_3213 - polyribonucleotide nucleotidyltransferase, at 512,940 to 515,078
_3213
EX28DRAFT_3214: EX28DRAFT_3214 - RNA, at 515,141 to 515,304
_3214
EX28DRAFT_3215: EX28DRAFT_3215 - ribosomal protein S15, bacterial/organelle, at 515,321 to 515,590
_3215
EX28DRAFT_3216: EX28DRAFT_3216 - RNA, at 515,534 to 515,648
_3216
EX28DRAFT_3217: EX28DRAFT_3217 - tRNA pseudouridine(55) synthase, at 515,745 to 516,695
_3217
EX28DRAFT_3218: EX28DRAFT_3218 - ribosome-binding factor A, at 516,695 to 517,099
_3218
EX28DRAFT_3219: EX28DRAFT_3219 - translation initiation factor IF-2, at 517,189 to 519,876
_3219
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 515.232 kb on - strand, within EX28DRAFT_3214 at 515.248 kb on - strand, within EX28DRAFT_3214 at 515.854 kb on - strand, within EX28DRAFT_3217 at 516.027 kb on + strand, within EX28DRAFT_3217 at 516.028 kb on - strand, within EX28DRAFT_3217 at 516.101 kb on - strand, within EX28DRAFT_3217 at 516.101 kb on - strand, within EX28DRAFT_3217 at 516.101 kb on - strand, within EX28DRAFT_3217 at 516.160 kb on + strand, within EX28DRAFT_3217 at 516.160 kb on + strand, within EX28DRAFT_3217 at 516.160 kb on + strand, within EX28DRAFT_3217 at 516.161 kb on - strand, within EX28DRAFT_3217 at 516.161 kb on - strand, within EX28DRAFT_3217 at 516.161 kb on - strand, within EX28DRAFT_3217 at 516.181 kb on - strand, within EX28DRAFT_3217 at 516.230 kb on - strand, within EX28DRAFT_3217 at 516.230 kb on - strand, within EX28DRAFT_3217 at 516.281 kb on - strand, within EX28DRAFT_3217 at 516.566 kb on + strand, within EX28DRAFT_3217 at 516.589 kb on + strand, within EX28DRAFT_3217 at 516.589 kb on + strand, within EX28DRAFT_3217 at 516.593 kb on + strand, within EX28DRAFT_3217 at 516.594 kb on - strand, within EX28DRAFT_3217 at 516.594 kb on - strand, within EX28DRAFT_3217
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 515,232 - EX28DRAFT_3214 0.55 +0.2 515,248 - EX28DRAFT_3214 0.65 +0.6 515,854 - EX28DRAFT_3217 0.11 -1.0 516,027 + EX28DRAFT_3217 0.30 -3.2 516,028 - EX28DRAFT_3217 0.30 -0.3 516,101 - EX28DRAFT_3217 0.37 -1.7 516,101 - EX28DRAFT_3217 0.37 -2.4 516,101 - EX28DRAFT_3217 0.37 -0.6 516,160 + EX28DRAFT_3217 0.44 -0.8 516,160 + EX28DRAFT_3217 0.44 -1.6 516,160 + EX28DRAFT_3217 0.44 -0.6 516,161 - EX28DRAFT_3217 0.44 -3.0 516,161 - EX28DRAFT_3217 0.44 -1.7 516,161 - EX28DRAFT_3217 0.44 -1.7 516,181 - EX28DRAFT_3217 0.46 -2.0 516,230 - EX28DRAFT_3217 0.51 +1.0 516,230 - EX28DRAFT_3217 0.51 -0.6 516,281 - EX28DRAFT_3217 0.56 -1.8 516,566 + EX28DRAFT_3217 0.86 -1.2 516,589 + EX28DRAFT_3217 0.89 +0.4 516,589 + EX28DRAFT_3217 0.89 -1.4 516,593 + EX28DRAFT_3217 0.89 -2.6 516,594 - EX28DRAFT_3217 0.89 -1.5 516,594 - EX28DRAFT_3217 0.89 -2.5
Or see this region's nucleotide sequence