Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3186 and EX28DRAFT_3187 are separated by 20 nucleotides EX28DRAFT_3187 and EX28DRAFT_3188 are separated by 10 nucleotides EX28DRAFT_3188 and EX28DRAFT_3189 overlap by 11 nucleotides EX28DRAFT_3189 and EX28DRAFT_3190 are separated by 16 nucleotides
EX28DRAFT_3186: EX28DRAFT_3186 - D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit, at 487,114 to 488,409
_3186
EX28DRAFT_3187: EX28DRAFT_3187 - PTS system, mannose/fructose/sorbose family, IIB component, at 488,430 to 488,903
_3187
EX28DRAFT_3188: EX28DRAFT_3188 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC, at 488,914 to 489,693
_3188
EX28DRAFT_3189: EX28DRAFT_3189 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID, at 489,683 to 490,561
_3189
EX28DRAFT_3190: EX28DRAFT_3190 - Phosphotransferase system, mannose/fructose-specific component IIA, at 490,578 to 491,012
_3190
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 488.004 kb on - strand, within EX28DRAFT_3186 at 488.101 kb on + strand, within EX28DRAFT_3186 at 488.102 kb on - strand, within EX28DRAFT_3186 at 488.117 kb on - strand, within EX28DRAFT_3186 at 488.162 kb on - strand, within EX28DRAFT_3186 at 488.182 kb on + strand, within EX28DRAFT_3186 at 488.272 kb on + strand, within EX28DRAFT_3186 at 488.293 kb on - strand at 488.357 kb on + strand at 488.357 kb on + strand at 488.358 kb on - strand at 488.358 kb on - strand at 488.358 kb on - strand at 488.488 kb on + strand, within EX28DRAFT_3187 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.748 kb on - strand, within EX28DRAFT_3187 at 489.080 kb on + strand, within EX28DRAFT_3188 at 489.243 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.335 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.392 kb on - strand, within EX28DRAFT_3188 at 489.526 kb on + strand, within EX28DRAFT_3188 at 489.535 kb on + strand, within EX28DRAFT_3188 at 489.633 kb on + strand at 489.634 kb on - strand at 489.634 kb on - strand at 489.691 kb on + strand at 489.692 kb on - strand at 489.692 kb on - strand at 489.692 kb on - strand at 489.805 kb on - strand, within EX28DRAFT_3189 at 489.859 kb on + strand, within EX28DRAFT_3189 at 489.860 kb on - strand, within EX28DRAFT_3189 at 490.235 kb on + strand, within EX28DRAFT_3189 at 490.349 kb on + strand, within EX28DRAFT_3189 at 490.582 kb on + strand at 490.582 kb on + strand at 490.589 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 488,004 - EX28DRAFT_3186 0.69 -0.6 488,101 + EX28DRAFT_3186 0.76 +0.4 488,102 - EX28DRAFT_3186 0.76 +0.1 488,117 - EX28DRAFT_3186 0.77 +0.5 488,162 - EX28DRAFT_3186 0.81 +0.0 488,182 + EX28DRAFT_3186 0.82 -0.2 488,272 + EX28DRAFT_3186 0.89 -0.2 488,293 - +0.0 488,357 + +0.5 488,357 + +0.8 488,358 - +0.2 488,358 - -2.6 488,358 - -0.2 488,488 + EX28DRAFT_3187 0.12 +0.4 488,747 + EX28DRAFT_3187 0.67 -1.3 488,747 + EX28DRAFT_3187 0.67 +0.4 488,748 - EX28DRAFT_3187 0.67 -0.8 489,080 + EX28DRAFT_3188 0.21 +0.6 489,243 + EX28DRAFT_3188 0.42 -0.2 489,309 + EX28DRAFT_3188 0.51 +0.9 489,309 + EX28DRAFT_3188 0.51 -1.4 489,334 + EX28DRAFT_3188 0.54 -0.8 489,334 + EX28DRAFT_3188 0.54 +0.1 489,335 - EX28DRAFT_3188 0.54 -0.3 489,365 - EX28DRAFT_3188 0.58 -0.5 489,365 - EX28DRAFT_3188 0.58 +0.3 489,392 - EX28DRAFT_3188 0.61 -1.4 489,526 + EX28DRAFT_3188 0.78 +0.2 489,535 + EX28DRAFT_3188 0.80 -0.1 489,633 + +0.2 489,634 - +0.0 489,634 - -2.4 489,691 + +0.0 489,692 - +0.0 489,692 - +0.7 489,692 - -0.2 489,805 - EX28DRAFT_3189 0.14 -0.9 489,859 + EX28DRAFT_3189 0.20 -0.3 489,860 - EX28DRAFT_3189 0.20 -2.3 490,235 + EX28DRAFT_3189 0.63 +0.6 490,349 + EX28DRAFT_3189 0.76 -0.1 490,582 + +0.1 490,582 + +0.2 490,589 + +0.3
Or see this region's nucleotide sequence