Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3143 and EX28DRAFT_3144 are separated by 55 nucleotides EX28DRAFT_3144 and EX28DRAFT_3145 overlap by 4 nucleotides EX28DRAFT_3145 and EX28DRAFT_3146 are separated by 11 nucleotides
EX28DRAFT_3143: EX28DRAFT_3143 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 443,924 to 444,772
_3143
EX28DRAFT_3144: EX28DRAFT_3144 - Uncharacterized conserved protein, at 444,828 to 445,121
_3144
EX28DRAFT_3145: EX28DRAFT_3145 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 445,118 to 446,005
_3145
EX28DRAFT_3146: EX28DRAFT_3146 - ABC-type sugar transport system, periplasmic component, at 446,017 to 447,018
_3146
Position (kb) 445
446
447 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.360 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.387 kb on + strand, within EX28DRAFT_3143 at 444.388 kb on - strand, within EX28DRAFT_3143 at 444.630 kb on - strand, within EX28DRAFT_3143 at 444.635 kb on - strand, within EX28DRAFT_3143 at 444.743 kb on - strand at 444.817 kb on + strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.819 kb on + strand at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.864 kb on - strand, within EX28DRAFT_3144 at 444.910 kb on + strand, within EX28DRAFT_3144 at 444.911 kb on - strand, within EX28DRAFT_3144 at 444.955 kb on + strand, within EX28DRAFT_3144 at 444.964 kb on + strand, within EX28DRAFT_3144 at 444.964 kb on + strand, within EX28DRAFT_3144 at 444.965 kb on - strand, within EX28DRAFT_3144 at 444.969 kb on - strand, within EX28DRAFT_3144 at 445.003 kb on - strand, within EX28DRAFT_3144 at 445.091 kb on + strand, within EX28DRAFT_3144 at 445.091 kb on + strand, within EX28DRAFT_3144 at 445.092 kb on - strand at 445.240 kb on + strand, within EX28DRAFT_3145 at 445.240 kb on + strand, within EX28DRAFT_3145 at 445.389 kb on + strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.393 kb on - strand, within EX28DRAFT_3145 at 445.450 kb on - strand, within EX28DRAFT_3145 at 445.578 kb on + strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.994 kb on + strand at 445.995 kb on - strand at 446.099 kb on + strand at 446.099 kb on + strand at 446.099 kb on + strand at 446.100 kb on - strand at 446.279 kb on + strand, within EX28DRAFT_3146 at 446.417 kb on - strand, within EX28DRAFT_3146 at 446.459 kb on + strand, within EX28DRAFT_3146 at 446.564 kb on + strand, within EX28DRAFT_3146 at 446.565 kb on - strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.662 kb on + strand, within EX28DRAFT_3146 at 446.663 kb on - strand, within EX28DRAFT_3146 at 446.786 kb on + strand, within EX28DRAFT_3146 at 446.856 kb on - strand, within EX28DRAFT_3146
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 444,315 - EX28DRAFT_3143 0.46 +0.1 444,315 - EX28DRAFT_3143 0.46 -0.8 444,360 + EX28DRAFT_3143 0.51 +0.4 444,385 + EX28DRAFT_3143 0.54 -0.9 444,385 + EX28DRAFT_3143 0.54 -1.4 444,387 + EX28DRAFT_3143 0.55 -0.2 444,388 - EX28DRAFT_3143 0.55 +0.4 444,630 - EX28DRAFT_3143 0.83 -0.1 444,635 - EX28DRAFT_3143 0.84 +0.0 444,743 - +0.4 444,817 + +0.2 444,818 - +1.2 444,818 - +0.5 444,818 - +0.1 444,819 + +0.0 444,863 + EX28DRAFT_3144 0.12 -0.0 444,863 + EX28DRAFT_3144 0.12 -0.8 444,863 + EX28DRAFT_3144 0.12 -0.7 444,864 - EX28DRAFT_3144 0.12 -0.5 444,910 + EX28DRAFT_3144 0.28 -2.0 444,911 - EX28DRAFT_3144 0.28 -0.8 444,955 + EX28DRAFT_3144 0.43 -1.4 444,964 + EX28DRAFT_3144 0.46 +0.1 444,964 + EX28DRAFT_3144 0.46 -0.5 444,965 - EX28DRAFT_3144 0.47 -0.8 444,969 - EX28DRAFT_3144 0.48 -0.3 445,003 - EX28DRAFT_3144 0.60 -1.6 445,091 + EX28DRAFT_3144 0.89 -0.9 445,091 + EX28DRAFT_3144 0.89 -1.3 445,092 - -0.5 445,240 + EX28DRAFT_3145 0.14 +1.1 445,240 + EX28DRAFT_3145 0.14 -0.2 445,389 + EX28DRAFT_3145 0.31 -1.2 445,390 - EX28DRAFT_3145 0.31 +0.1 445,390 - EX28DRAFT_3145 0.31 +0.7 445,390 - EX28DRAFT_3145 0.31 -0.3 445,390 - EX28DRAFT_3145 0.31 -0.4 445,393 - EX28DRAFT_3145 0.31 -1.3 445,450 - EX28DRAFT_3145 0.37 -0.0 445,578 + EX28DRAFT_3145 0.52 -0.8 445,579 - EX28DRAFT_3145 0.52 +0.5 445,579 - EX28DRAFT_3145 0.52 -0.1 445,579 - EX28DRAFT_3145 0.52 +0.7 445,579 - EX28DRAFT_3145 0.52 -0.3 445,579 - EX28DRAFT_3145 0.52 +0.8 445,994 + -0.2 445,995 - +0.7 446,099 + -0.4 446,099 + +3.0 446,099 + -0.7 446,100 - -0.4 446,279 + EX28DRAFT_3146 0.26 +0.3 446,417 - EX28DRAFT_3146 0.40 +0.3 446,459 + EX28DRAFT_3146 0.44 -0.6 446,564 + EX28DRAFT_3146 0.55 -1.5 446,565 - EX28DRAFT_3146 0.55 -0.1 446,660 + EX28DRAFT_3146 0.64 +0.2 446,660 + EX28DRAFT_3146 0.64 -1.1 446,660 + EX28DRAFT_3146 0.64 +0.1 446,660 + EX28DRAFT_3146 0.64 +0.5 446,660 + EX28DRAFT_3146 0.64 -2.4 446,660 + EX28DRAFT_3146 0.64 -0.4 446,661 - EX28DRAFT_3146 0.64 +3.3 446,661 - EX28DRAFT_3146 0.64 -0.2 446,661 - EX28DRAFT_3146 0.64 -0.3 446,661 - EX28DRAFT_3146 0.64 +0.0 446,661 - EX28DRAFT_3146 0.64 +0.3 446,661 - EX28DRAFT_3146 0.64 -0.1 446,662 + EX28DRAFT_3146 0.64 -1.5 446,663 - EX28DRAFT_3146 0.64 +0.7 446,786 + EX28DRAFT_3146 0.77 +1.1 446,856 - EX28DRAFT_3146 0.84 +0.1
Or see this region's nucleotide sequence