Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3019

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3018 and EX28DRAFT_3019 are separated by 8 nucleotidesEX28DRAFT_3019 and EX28DRAFT_3020 overlap by 8 nucleotides EX28DRAFT_3018: EX28DRAFT_3018 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 326,233 to 328,671 _3018 EX28DRAFT_3019: EX28DRAFT_3019 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 328,680 to 330,617 _3019 EX28DRAFT_3020: EX28DRAFT_3020 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 330,610 to 331,938 _3020 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 328.087 kb on + strand, within EX28DRAFT_3018at 328.087 kb on + strand, within EX28DRAFT_3018at 328.228 kb on + strand, within EX28DRAFT_3018at 328.266 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.283 kb on - strand, within EX28DRAFT_3018at 328.283 kb on - strand, within EX28DRAFT_3018at 328.385 kb on - strand, within EX28DRAFT_3018at 328.387 kb on + strand, within EX28DRAFT_3018at 328.445 kb on - strandat 328.445 kb on - strandat 328.499 kb on - strandat 328.572 kb on + strandat 328.572 kb on + strandat 328.669 kb on + strandat 328.670 kb on - strandat 328.670 kb on - strandat 328.679 kb on + strandat 328.680 kb on - strandat 328.802 kb on + strandat 328.876 kb on - strand, within EX28DRAFT_3019at 328.912 kb on + strand, within EX28DRAFT_3019at 328.913 kb on - strand, within EX28DRAFT_3019at 329.231 kb on + strand, within EX28DRAFT_3019at 329.232 kb on - strand, within EX28DRAFT_3019at 329.304 kb on + strand, within EX28DRAFT_3019at 329.321 kb on + strand, within EX28DRAFT_3019at 329.325 kb on + strand, within EX28DRAFT_3019at 329.325 kb on + strand, within EX28DRAFT_3019at 329.325 kb on + strand, within EX28DRAFT_3019at 329.326 kb on - strand, within EX28DRAFT_3019at 329.450 kb on + strand, within EX28DRAFT_3019at 329.647 kb on - strand, within EX28DRAFT_3019at 329.652 kb on + strand, within EX28DRAFT_3019at 329.709 kb on + strand, within EX28DRAFT_3019at 329.785 kb on - strand, within EX28DRAFT_3019at 329.785 kb on - strand, within EX28DRAFT_3019at 329.785 kb on - strand, within EX28DRAFT_3019at 329.826 kb on - strand, within EX28DRAFT_3019at 329.976 kb on - strand, within EX28DRAFT_3019at 330.027 kb on + strand, within EX28DRAFT_3019at 330.027 kb on + strand, within EX28DRAFT_3019at 330.028 kb on - strand, within EX28DRAFT_3019at 330.028 kb on - strand, within EX28DRAFT_3019at 330.215 kb on + strand, within EX28DRAFT_3019at 330.215 kb on + strand, within EX28DRAFT_3019at 330.292 kb on - strand, within EX28DRAFT_3019at 330.407 kb on + strand, within EX28DRAFT_3019at 330.522 kb on + strandat 330.595 kb on - strandat 330.636 kb on + strandat 330.636 kb on + strandat 330.641 kb on + strandat 330.642 kb on - strandat 330.922 kb on - strand, within EX28DRAFT_3020at 330.924 kb on - strand, within EX28DRAFT_3020at 330.924 kb on - strand, within EX28DRAFT_3020at 331.280 kb on - strand, within EX28DRAFT_3020at 331.280 kb on - strand, within EX28DRAFT_3020at 331.585 kb on + strand, within EX28DRAFT_3020at 331.586 kb on - strand, within EX28DRAFT_3020at 331.616 kb on - strand, within EX28DRAFT_3020

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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328,087 + EX28DRAFT_3018 0.76 -1.1
328,087 + EX28DRAFT_3018 0.76 -0.6
328,228 + EX28DRAFT_3018 0.82 -0.2
328,266 + EX28DRAFT_3018 0.83 -2.4
328,282 + EX28DRAFT_3018 0.84 -0.5
328,282 + EX28DRAFT_3018 0.84 -0.3
328,282 + EX28DRAFT_3018 0.84 -0.1
328,282 + EX28DRAFT_3018 0.84 +0.1
328,282 + EX28DRAFT_3018 0.84 +1.2
328,283 - EX28DRAFT_3018 0.84 -1.0
328,283 - EX28DRAFT_3018 0.84 -0.7
328,385 - EX28DRAFT_3018 0.88 +0.3
328,387 + EX28DRAFT_3018 0.88 -1.7
328,445 - -0.2
328,445 - -0.5
328,499 - -0.5
328,572 + +1.4
328,572 + +0.4
328,669 + -0.4
328,670 - +0.1
328,670 - -1.0
328,679 + +0.3
328,680 - -1.2
328,802 + -0.8
328,876 - EX28DRAFT_3019 0.10 +0.3
328,912 + EX28DRAFT_3019 0.12 +0.4
328,913 - EX28DRAFT_3019 0.12 +0.3
329,231 + EX28DRAFT_3019 0.28 +1.9
329,232 - EX28DRAFT_3019 0.28 +0.0
329,304 + EX28DRAFT_3019 0.32 +2.7
329,321 + EX28DRAFT_3019 0.33 +2.2
329,325 + EX28DRAFT_3019 0.33 -1.0
329,325 + EX28DRAFT_3019 0.33 +0.3
329,325 + EX28DRAFT_3019 0.33 -0.1
329,326 - EX28DRAFT_3019 0.33 -1.8
329,450 + EX28DRAFT_3019 0.40 +0.7
329,647 - EX28DRAFT_3019 0.50 -0.1
329,652 + EX28DRAFT_3019 0.50 -0.4
329,709 + EX28DRAFT_3019 0.53 +0.1
329,785 - EX28DRAFT_3019 0.57 +0.4
329,785 - EX28DRAFT_3019 0.57 -0.1
329,785 - EX28DRAFT_3019 0.57 +0.4
329,826 - EX28DRAFT_3019 0.59 -0.2
329,976 - EX28DRAFT_3019 0.67 +0.3
330,027 + EX28DRAFT_3019 0.70 +0.4
330,027 + EX28DRAFT_3019 0.70 +0.1
330,028 - EX28DRAFT_3019 0.70 +0.4
330,028 - EX28DRAFT_3019 0.70 +0.5
330,215 + EX28DRAFT_3019 0.79 +0.9
330,215 + EX28DRAFT_3019 0.79 +0.0
330,292 - EX28DRAFT_3019 0.83 +0.2
330,407 + EX28DRAFT_3019 0.89 -2.2
330,522 + -0.4
330,595 - +1.8
330,636 + -0.4
330,636 + -1.3
330,641 + +1.2
330,642 - +0.1
330,922 - EX28DRAFT_3020 0.23 -0.3
330,924 - EX28DRAFT_3020 0.24 +0.5
330,924 - EX28DRAFT_3020 0.24 -0.2
331,280 - EX28DRAFT_3020 0.50 +0.6
331,280 - EX28DRAFT_3020 0.50 +1.2
331,585 + EX28DRAFT_3020 0.73 +0.4
331,586 - EX28DRAFT_3020 0.73 +0.1
331,616 - EX28DRAFT_3020 0.76 +0.5

Or see this region's nucleotide sequence