Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2997

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2995 and EX28DRAFT_2996 are separated by 56 nucleotidesEX28DRAFT_2996 and EX28DRAFT_2997 overlap by 1 nucleotidesEX28DRAFT_2997 and EX28DRAFT_2998 are separated by 138 nucleotides EX28DRAFT_2995: EX28DRAFT_2995 - Protein of unknown function (DUF2884), at 304,611 to 305,327 _2995 EX28DRAFT_2996: EX28DRAFT_2996 - Uncharacterized protein conserved in bacteria, at 305,384 to 305,710 _2996 EX28DRAFT_2997: EX28DRAFT_2997 - tRNA (guanine-N(7)-)-methyltransferase, at 305,710 to 306,429 _2997 EX28DRAFT_2998: EX28DRAFT_2998 - A/G-specific DNA-adenine glycosylase (EC 3.2.2.-), at 306,568 to 307,626 _2998 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1 2at 304.894 kb on + strand, within EX28DRAFT_2995at 304.895 kb on - strand, within EX28DRAFT_2995at 305.229 kb on + strand, within EX28DRAFT_2995at 305.331 kb on - strandat 305.331 kb on - strandat 305.360 kb on + strandat 305.360 kb on + strandat 305.383 kb on - strandat 305.383 kb on - strandat 305.385 kb on + strandat 305.386 kb on - strandat 305.386 kb on - strandat 305.452 kb on + strand, within EX28DRAFT_2996at 305.452 kb on + strand, within EX28DRAFT_2996at 305.606 kb on + strand, within EX28DRAFT_2996at 305.606 kb on + strand, within EX28DRAFT_2996at 305.607 kb on - strand, within EX28DRAFT_2996at 305.712 kb on - strandat 305.731 kb on + strandat 305.731 kb on + strandat 305.810 kb on + strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.869 kb on - strand, within EX28DRAFT_2997at 305.869 kb on - strand, within EX28DRAFT_2997at 305.879 kb on + strand, within EX28DRAFT_2997at 305.902 kb on - strand, within EX28DRAFT_2997at 305.929 kb on - strand, within EX28DRAFT_2997at 305.973 kb on + strand, within EX28DRAFT_2997at 305.977 kb on - strand, within EX28DRAFT_2997at 305.977 kb on - strand, within EX28DRAFT_2997at 306.048 kb on + strand, within EX28DRAFT_2997at 306.492 kb on - strandat 306.492 kb on - strandat 306.492 kb on - strandat 306.517 kb on + strandat 306.557 kb on + strandat 306.622 kb on + strandat 306.622 kb on + strandat 306.623 kb on - strandat 306.630 kb on + strandat 306.671 kb on + strandat 306.671 kb on + strandat 306.672 kb on - strandat 307.074 kb on - strand, within EX28DRAFT_2998at 307.074 kb on - strand, within EX28DRAFT_2998at 307.074 kb on - strand, within EX28DRAFT_2998at 307.275 kb on + strand, within EX28DRAFT_2998at 307.275 kb on + strand, within EX28DRAFT_2998at 307.275 kb on + strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.346 kb on + strand, within EX28DRAFT_2998at 307.346 kb on + strand, within EX28DRAFT_2998at 307.346 kb on + strand, within EX28DRAFT_2998at 307.347 kb on - strand, within EX28DRAFT_2998at 307.347 kb on - strand, within EX28DRAFT_2998at 307.348 kb on + strand, within EX28DRAFT_2998

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
304,894 + EX28DRAFT_2995 0.39 -0.3
304,895 - EX28DRAFT_2995 0.40 -0.1
305,229 + EX28DRAFT_2995 0.86 -0.1
305,331 - -1.2
305,331 - +0.0
305,360 + -0.1
305,360 + -1.2
305,383 - +1.3
305,383 - +0.3
305,385 + -0.1
305,386 - -0.4
305,386 - +0.3
305,452 + EX28DRAFT_2996 0.21 -0.2
305,452 + EX28DRAFT_2996 0.21 -0.6
305,606 + EX28DRAFT_2996 0.68 -0.0
305,606 + EX28DRAFT_2996 0.68 -1.4
305,607 - EX28DRAFT_2996 0.68 +0.2
305,712 - -1.1
305,731 + -1.4
305,731 + -1.5
305,810 + EX28DRAFT_2997 0.14 -0.9
305,811 - EX28DRAFT_2997 0.14 -1.1
305,811 - EX28DRAFT_2997 0.14 -1.2
305,811 - EX28DRAFT_2997 0.14 -0.7
305,868 + EX28DRAFT_2997 0.22 -0.9
305,868 + EX28DRAFT_2997 0.22 +0.9
305,868 + EX28DRAFT_2997 0.22 -1.4
305,868 + EX28DRAFT_2997 0.22 -2.0
305,869 - EX28DRAFT_2997 0.22 -1.3
305,869 - EX28DRAFT_2997 0.22 -0.4
305,879 + EX28DRAFT_2997 0.23 -1.2
305,902 - EX28DRAFT_2997 0.27 -1.2
305,929 - EX28DRAFT_2997 0.30 -0.6
305,973 + EX28DRAFT_2997 0.37 -2.0
305,977 - EX28DRAFT_2997 0.37 -1.3
305,977 - EX28DRAFT_2997 0.37 -1.6
306,048 + EX28DRAFT_2997 0.47 -0.7
306,492 - +0.0
306,492 - +0.5
306,492 - +0.3
306,517 + -1.0
306,557 + +0.2
306,622 + +0.6
306,622 + -0.0
306,623 - -0.5
306,630 + +0.0
306,671 + -1.1
306,671 + +0.1
306,672 - -2.0
307,074 - EX28DRAFT_2998 0.48 +2.1
307,074 - EX28DRAFT_2998 0.48 +0.6
307,074 - EX28DRAFT_2998 0.48 -0.3
307,275 + EX28DRAFT_2998 0.67 -0.2
307,275 + EX28DRAFT_2998 0.67 +0.1
307,275 + EX28DRAFT_2998 0.67 -0.1
307,276 - EX28DRAFT_2998 0.67 +0.3
307,276 - EX28DRAFT_2998 0.67 +0.7
307,276 - EX28DRAFT_2998 0.67 -0.3
307,276 - EX28DRAFT_2998 0.67 -0.5
307,276 - EX28DRAFT_2998 0.67 -0.5
307,346 + EX28DRAFT_2998 0.73 +0.8
307,346 + EX28DRAFT_2998 0.73 -1.9
307,346 + EX28DRAFT_2998 0.73 -0.3
307,347 - EX28DRAFT_2998 0.74 +0.2
307,347 - EX28DRAFT_2998 0.74 +0.2
307,348 + EX28DRAFT_2998 0.74 -0.7

Or see this region's nucleotide sequence