Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2837 and EX28DRAFT_2838 are separated by 59 nucleotides EX28DRAFT_2838 and EX28DRAFT_2839 are separated by 116 nucleotides EX28DRAFT_2839 and EX28DRAFT_2840 overlap by 7 nucleotides
EX28DRAFT_2837: EX28DRAFT_2837 - RNA polymerase, sigma 38 subunit, RpoS, at 139,767 to 140,759
_2837
EX28DRAFT_2838: EX28DRAFT_2838 - Membrane proteins related to metalloendopeptidases, at 140,819 to 141,943
_2838
EX28DRAFT_2839: EX28DRAFT_2839 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 142,060 to 142,686
_2839
EX28DRAFT_2840: EX28DRAFT_2840 - 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11), at 142,680 to 143,441
_2840
Position (kb) 140
141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.103 kb on - strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.199 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.385 kb on + strand, within EX28DRAFT_2837 at 140.385 kb on + strand, within EX28DRAFT_2837 at 140.386 kb on - strand, within EX28DRAFT_2837 at 140.527 kb on + strand, within EX28DRAFT_2837 at 140.579 kb on - strand, within EX28DRAFT_2837 at 140.579 kb on - strand, within EX28DRAFT_2837 at 140.598 kb on + strand, within EX28DRAFT_2837 at 140.667 kb on + strand at 140.668 kb on - strand at 140.671 kb on - strand at 140.727 kb on + strand at 140.760 kb on - strand at 140.760 kb on - strand at 140.890 kb on + strand at 140.939 kb on - strand, within EX28DRAFT_2838 at 140.983 kb on - strand, within EX28DRAFT_2838 at 140.995 kb on - strand, within EX28DRAFT_2838 at 141.005 kb on - strand, within EX28DRAFT_2838 at 141.017 kb on - strand, within EX28DRAFT_2838 at 141.019 kb on + strand, within EX28DRAFT_2838 at 141.020 kb on - strand, within EX28DRAFT_2838 at 141.121 kb on + strand, within EX28DRAFT_2838 at 141.208 kb on + strand, within EX28DRAFT_2838 at 141.209 kb on - strand, within EX28DRAFT_2838 at 141.209 kb on - strand, within EX28DRAFT_2838 at 141.283 kb on + strand, within EX28DRAFT_2838 at 141.287 kb on - strand, within EX28DRAFT_2838 at 141.305 kb on - strand, within EX28DRAFT_2838 at 141.337 kb on + strand, within EX28DRAFT_2838 at 141.386 kb on - strand, within EX28DRAFT_2838 at 141.440 kb on - strand, within EX28DRAFT_2838 at 141.561 kb on + strand, within EX28DRAFT_2838 at 141.561 kb on + strand, within EX28DRAFT_2838 at 141.562 kb on - strand, within EX28DRAFT_2838 at 141.590 kb on - strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.592 kb on - strand, within EX28DRAFT_2838 at 141.609 kb on + strand, within EX28DRAFT_2838 at 141.645 kb on + strand, within EX28DRAFT_2838 at 141.856 kb on + strand at 141.857 kb on - strand at 141.857 kb on - strand at 141.866 kb on - strand at 141.945 kb on + strand at 141.968 kb on - strand at 141.986 kb on - strand at 142.020 kb on - strand at 142.038 kb on + strand at 142.039 kb on - strand at 142.120 kb on - strand at 142.317 kb on + strand, within EX28DRAFT_2839 at 142.360 kb on + strand, within EX28DRAFT_2839 at 142.361 kb on - strand, within EX28DRAFT_2839 at 142.387 kb on + strand, within EX28DRAFT_2839 at 142.387 kb on + strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.544 kb on - strand, within EX28DRAFT_2839 at 142.580 kb on - strand, within EX28DRAFT_2839 at 142.740 kb on - strand at 142.742 kb on - strand at 142.781 kb on - strand, within EX28DRAFT_2840 at 142.830 kb on - strand, within EX28DRAFT_2840
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 140,102 + EX28DRAFT_2837 0.34 +5.8 140,102 + EX28DRAFT_2837 0.34 +3.9 140,103 - EX28DRAFT_2837 0.34 +1.0 140,126 + EX28DRAFT_2837 0.36 +1.5 140,126 + EX28DRAFT_2837 0.36 +3.6 140,199 - EX28DRAFT_2837 0.44 +1.1 140,286 - EX28DRAFT_2837 0.52 +1.3 140,286 - EX28DRAFT_2837 0.52 +0.5 140,286 - EX28DRAFT_2837 0.52 +2.2 140,385 + EX28DRAFT_2837 0.62 -0.3 140,385 + EX28DRAFT_2837 0.62 +0.2 140,386 - EX28DRAFT_2837 0.62 +1.1 140,527 + EX28DRAFT_2837 0.77 +1.1 140,579 - EX28DRAFT_2837 0.82 +0.3 140,579 - EX28DRAFT_2837 0.82 +2.8 140,598 + EX28DRAFT_2837 0.84 +2.4 140,667 + +0.1 140,668 - +6.5 140,671 - -0.4 140,727 + +0.6 140,760 - +2.5 140,760 - +1.8 140,890 + +0.9 140,939 - EX28DRAFT_2838 0.11 +1.2 140,983 - EX28DRAFT_2838 0.15 +1.4 140,995 - EX28DRAFT_2838 0.16 +1.0 141,005 - EX28DRAFT_2838 0.17 +0.9 141,017 - EX28DRAFT_2838 0.18 -1.4 141,019 + EX28DRAFT_2838 0.18 +2.4 141,020 - EX28DRAFT_2838 0.18 +0.8 141,121 + EX28DRAFT_2838 0.27 +2.8 141,208 + EX28DRAFT_2838 0.35 +0.9 141,209 - EX28DRAFT_2838 0.35 +1.8 141,209 - EX28DRAFT_2838 0.35 +0.4 141,283 + EX28DRAFT_2838 0.41 -0.4 141,287 - EX28DRAFT_2838 0.42 +1.2 141,305 - EX28DRAFT_2838 0.43 +0.5 141,337 + EX28DRAFT_2838 0.46 +0.6 141,386 - EX28DRAFT_2838 0.50 +0.5 141,440 - EX28DRAFT_2838 0.55 +0.6 141,561 + EX28DRAFT_2838 0.66 +0.2 141,561 + EX28DRAFT_2838 0.66 -0.3 141,562 - EX28DRAFT_2838 0.66 -0.2 141,590 - EX28DRAFT_2838 0.69 +0.6 141,591 + EX28DRAFT_2838 0.69 +0.5 141,591 + EX28DRAFT_2838 0.69 +0.5 141,591 + EX28DRAFT_2838 0.69 -0.7 141,592 - EX28DRAFT_2838 0.69 +0.1 141,609 + EX28DRAFT_2838 0.70 -1.1 141,645 + EX28DRAFT_2838 0.73 -0.1 141,856 + +0.4 141,857 - +0.3 141,857 - -1.5 141,866 - +0.0 141,945 + +1.9 141,968 - -0.0 141,986 - -0.8 142,020 - +0.1 142,038 + -1.7 142,039 - -0.2 142,120 - -0.1 142,317 + EX28DRAFT_2839 0.41 -0.2 142,360 + EX28DRAFT_2839 0.48 -3.1 142,361 - EX28DRAFT_2839 0.48 -0.9 142,387 + EX28DRAFT_2839 0.52 +0.6 142,387 + EX28DRAFT_2839 0.52 -1.1 142,388 - EX28DRAFT_2839 0.52 -0.5 142,388 - EX28DRAFT_2839 0.52 -0.3 142,388 - EX28DRAFT_2839 0.52 -0.9 142,502 + EX28DRAFT_2839 0.70 -1.0 142,502 + EX28DRAFT_2839 0.70 +0.2 142,502 + EX28DRAFT_2839 0.70 -1.7 142,503 - EX28DRAFT_2839 0.71 -0.4 142,503 - EX28DRAFT_2839 0.71 -0.6 142,503 - EX28DRAFT_2839 0.71 -1.3 142,503 - EX28DRAFT_2839 0.71 -0.2 142,503 - EX28DRAFT_2839 0.71 +0.2 142,544 - EX28DRAFT_2839 0.77 -0.8 142,580 - EX28DRAFT_2839 0.83 -1.7 142,740 - -0.5 142,742 - -1.0 142,781 - EX28DRAFT_2840 0.13 +0.0 142,830 - EX28DRAFT_2840 0.20 +1.5
Or see this region's nucleotide sequence