Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2837

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2835 and EX28DRAFT_2836 overlap by 4 nucleotidesEX28DRAFT_2836 and EX28DRAFT_2837 are separated by 52 nucleotidesEX28DRAFT_2837 and EX28DRAFT_2838 are separated by 59 nucleotides EX28DRAFT_2835: EX28DRAFT_2835 - Arabinose efflux permease, at 138,138 to 139,340 _2835 EX28DRAFT_2836: EX28DRAFT_2836 - Uncharacterized protein conserved in bacteria, at 139,337 to 139,714 _2836 EX28DRAFT_2837: EX28DRAFT_2837 - RNA polymerase, sigma 38 subunit, RpoS, at 139,767 to 140,759 _2837 EX28DRAFT_2838: EX28DRAFT_2838 - Membrane proteins related to metalloendopeptidases, at 140,819 to 141,943 _2838 Position (kb) 139 140 141Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 138.768 kb on + strand, within EX28DRAFT_2835at 138.768 kb on + strand, within EX28DRAFT_2835at 138.768 kb on + strand, within EX28DRAFT_2835at 138.769 kb on - strand, within EX28DRAFT_2835at 138.769 kb on - strand, within EX28DRAFT_2835at 138.769 kb on - strand, within EX28DRAFT_2835at 138.769 kb on - strand, within EX28DRAFT_2835at 138.770 kb on + strand, within EX28DRAFT_2835at 138.770 kb on + strand, within EX28DRAFT_2835at 138.819 kb on + strand, within EX28DRAFT_2835at 138.820 kb on - strand, within EX28DRAFT_2835at 138.820 kb on - strand, within EX28DRAFT_2835at 138.924 kb on - strand, within EX28DRAFT_2835at 139.034 kb on + strand, within EX28DRAFT_2835at 139.039 kb on + strand, within EX28DRAFT_2835at 139.142 kb on + strand, within EX28DRAFT_2835at 139.244 kb on + strandat 139.282 kb on - strandat 139.295 kb on + strandat 139.301 kb on + strandat 139.301 kb on + strandat 139.301 kb on + strandat 139.481 kb on + strand, within EX28DRAFT_2836at 139.554 kb on + strand, within EX28DRAFT_2836at 139.555 kb on - strand, within EX28DRAFT_2836at 139.706 kb on - strandat 140.102 kb on + strand, within EX28DRAFT_2837at 140.102 kb on + strand, within EX28DRAFT_2837at 140.103 kb on - strand, within EX28DRAFT_2837at 140.126 kb on + strand, within EX28DRAFT_2837at 140.126 kb on + strand, within EX28DRAFT_2837at 140.199 kb on - strand, within EX28DRAFT_2837at 140.286 kb on - strand, within EX28DRAFT_2837at 140.286 kb on - strand, within EX28DRAFT_2837at 140.286 kb on - strand, within EX28DRAFT_2837at 140.385 kb on + strand, within EX28DRAFT_2837at 140.385 kb on + strand, within EX28DRAFT_2837at 140.386 kb on - strand, within EX28DRAFT_2837at 140.527 kb on + strand, within EX28DRAFT_2837at 140.579 kb on - strand, within EX28DRAFT_2837at 140.579 kb on - strand, within EX28DRAFT_2837at 140.598 kb on + strand, within EX28DRAFT_2837at 140.667 kb on + strandat 140.668 kb on - strandat 140.671 kb on - strandat 140.727 kb on + strandat 140.760 kb on - strandat 140.760 kb on - strandat 140.890 kb on + strandat 140.939 kb on - strand, within EX28DRAFT_2838at 140.983 kb on - strand, within EX28DRAFT_2838at 140.995 kb on - strand, within EX28DRAFT_2838at 141.005 kb on - strand, within EX28DRAFT_2838at 141.017 kb on - strand, within EX28DRAFT_2838at 141.019 kb on + strand, within EX28DRAFT_2838at 141.020 kb on - strand, within EX28DRAFT_2838at 141.121 kb on + strand, within EX28DRAFT_2838at 141.208 kb on + strand, within EX28DRAFT_2838at 141.209 kb on - strand, within EX28DRAFT_2838at 141.209 kb on - strand, within EX28DRAFT_2838at 141.283 kb on + strand, within EX28DRAFT_2838at 141.287 kb on - strand, within EX28DRAFT_2838at 141.305 kb on - strand, within EX28DRAFT_2838at 141.337 kb on + strand, within EX28DRAFT_2838at 141.386 kb on - strand, within EX28DRAFT_2838at 141.440 kb on - strand, within EX28DRAFT_2838at 141.561 kb on + strand, within EX28DRAFT_2838at 141.561 kb on + strand, within EX28DRAFT_2838at 141.562 kb on - strand, within EX28DRAFT_2838at 141.590 kb on - strand, within EX28DRAFT_2838at 141.591 kb on + strand, within EX28DRAFT_2838at 141.591 kb on + strand, within EX28DRAFT_2838at 141.591 kb on + strand, within EX28DRAFT_2838at 141.592 kb on - strand, within EX28DRAFT_2838at 141.609 kb on + strand, within EX28DRAFT_2838at 141.645 kb on + strand, within EX28DRAFT_2838

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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138,768 + EX28DRAFT_2835 0.52 +0.3
138,768 + EX28DRAFT_2835 0.52 +0.2
138,768 + EX28DRAFT_2835 0.52 +0.3
138,769 - EX28DRAFT_2835 0.52 -0.1
138,769 - EX28DRAFT_2835 0.52 -0.5
138,769 - EX28DRAFT_2835 0.52 +1.4
138,769 - EX28DRAFT_2835 0.52 -0.8
138,770 + EX28DRAFT_2835 0.53 +0.1
138,770 + EX28DRAFT_2835 0.53 +0.3
138,819 + EX28DRAFT_2835 0.57 +0.1
138,820 - EX28DRAFT_2835 0.57 +0.5
138,820 - EX28DRAFT_2835 0.57 +0.7
138,924 - EX28DRAFT_2835 0.65 -0.1
139,034 + EX28DRAFT_2835 0.74 -0.1
139,039 + EX28DRAFT_2835 0.75 -0.1
139,142 + EX28DRAFT_2835 0.83 -1.6
139,244 + +2.5
139,282 - -0.1
139,295 + -0.1
139,301 + +0.3
139,301 + +0.1
139,301 + +1.2
139,481 + EX28DRAFT_2836 0.38 +0.6
139,554 + EX28DRAFT_2836 0.57 -0.3
139,555 - EX28DRAFT_2836 0.58 -0.1
139,706 - +0.2
140,102 + EX28DRAFT_2837 0.34 +5.8
140,102 + EX28DRAFT_2837 0.34 +3.9
140,103 - EX28DRAFT_2837 0.34 +1.0
140,126 + EX28DRAFT_2837 0.36 +1.5
140,126 + EX28DRAFT_2837 0.36 +3.6
140,199 - EX28DRAFT_2837 0.44 +1.1
140,286 - EX28DRAFT_2837 0.52 +1.3
140,286 - EX28DRAFT_2837 0.52 +0.5
140,286 - EX28DRAFT_2837 0.52 +2.2
140,385 + EX28DRAFT_2837 0.62 -0.3
140,385 + EX28DRAFT_2837 0.62 +0.2
140,386 - EX28DRAFT_2837 0.62 +1.1
140,527 + EX28DRAFT_2837 0.77 +1.1
140,579 - EX28DRAFT_2837 0.82 +0.3
140,579 - EX28DRAFT_2837 0.82 +2.8
140,598 + EX28DRAFT_2837 0.84 +2.4
140,667 + +0.1
140,668 - +6.5
140,671 - -0.4
140,727 + +0.6
140,760 - +2.5
140,760 - +1.8
140,890 + +0.9
140,939 - EX28DRAFT_2838 0.11 +1.2
140,983 - EX28DRAFT_2838 0.15 +1.4
140,995 - EX28DRAFT_2838 0.16 +1.0
141,005 - EX28DRAFT_2838 0.17 +0.9
141,017 - EX28DRAFT_2838 0.18 -1.4
141,019 + EX28DRAFT_2838 0.18 +2.4
141,020 - EX28DRAFT_2838 0.18 +0.8
141,121 + EX28DRAFT_2838 0.27 +2.8
141,208 + EX28DRAFT_2838 0.35 +0.9
141,209 - EX28DRAFT_2838 0.35 +1.8
141,209 - EX28DRAFT_2838 0.35 +0.4
141,283 + EX28DRAFT_2838 0.41 -0.4
141,287 - EX28DRAFT_2838 0.42 +1.2
141,305 - EX28DRAFT_2838 0.43 +0.5
141,337 + EX28DRAFT_2838 0.46 +0.6
141,386 - EX28DRAFT_2838 0.50 +0.5
141,440 - EX28DRAFT_2838 0.55 +0.6
141,561 + EX28DRAFT_2838 0.66 +0.2
141,561 + EX28DRAFT_2838 0.66 -0.3
141,562 - EX28DRAFT_2838 0.66 -0.2
141,590 - EX28DRAFT_2838 0.69 +0.6
141,591 + EX28DRAFT_2838 0.69 +0.5
141,591 + EX28DRAFT_2838 0.69 +0.5
141,591 + EX28DRAFT_2838 0.69 -0.7
141,592 - EX28DRAFT_2838 0.69 +0.1
141,609 + EX28DRAFT_2838 0.70 -1.1
141,645 + EX28DRAFT_2838 0.73 -0.1

Or see this region's nucleotide sequence