Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2795 and EX28DRAFT_2796 are separated by 63 nucleotides EX28DRAFT_2796 and EX28DRAFT_2797 overlap by 8 nucleotides EX28DRAFT_2797 and EX28DRAFT_2798 overlap by 4 nucleotides
EX28DRAFT_2795: EX28DRAFT_2795 - Glucitol operon activator, at 97,807 to 98,166
_2795
EX28DRAFT_2796: EX28DRAFT_2796 - transcriptional regulator, DeoR family, at 98,230 to 99,003
_2796
EX28DRAFT_2797: EX28DRAFT_2797 - KpsF/GutQ family protein, at 98,996 to 99,961
_2797
EX28DRAFT_2798: EX28DRAFT_2798 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 99,958 to 101,472
_2798
Position (kb) 98
99
100 Strain fitness (log2 ratio) -1
0
1 at 98.025 kb on + strand, within EX28DRAFT_2795 at 98.026 kb on - strand, within EX28DRAFT_2795 at 98.087 kb on + strand, within EX28DRAFT_2795 at 98.214 kb on - strand at 98.311 kb on + strand, within EX28DRAFT_2796 at 98.337 kb on - strand, within EX28DRAFT_2796 at 98.352 kb on - strand, within EX28DRAFT_2796 at 98.387 kb on - strand, within EX28DRAFT_2796 at 98.907 kb on + strand, within EX28DRAFT_2796 at 99.280 kb on + strand, within EX28DRAFT_2797 at 99.280 kb on + strand, within EX28DRAFT_2797 at 99.280 kb on + strand, within EX28DRAFT_2797 at 99.412 kb on + strand, within EX28DRAFT_2797 at 99.955 kb on + strand at 99.960 kb on - strand at 99.960 kb on - strand at 100.133 kb on - strand, within EX28DRAFT_2798 at 100.133 kb on - strand, within EX28DRAFT_2798 at 100.133 kb on - strand, within EX28DRAFT_2798 at 100.560 kb on - strand, within EX28DRAFT_2798 at 100.751 kb on + strand, within EX28DRAFT_2798 at 100.751 kb on + strand, within EX28DRAFT_2798
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 98,025 + EX28DRAFT_2795 0.61 -0.5 98,026 - EX28DRAFT_2795 0.61 +0.9 98,087 + EX28DRAFT_2795 0.78 +0.7 98,214 - -0.5 98,311 + EX28DRAFT_2796 0.10 -0.4 98,337 - EX28DRAFT_2796 0.14 -0.4 98,352 - EX28DRAFT_2796 0.16 -0.5 98,387 - EX28DRAFT_2796 0.20 -0.9 98,907 + EX28DRAFT_2796 0.87 -0.0 99,280 + EX28DRAFT_2797 0.29 -1.6 99,280 + EX28DRAFT_2797 0.29 -0.2 99,280 + EX28DRAFT_2797 0.29 +0.1 99,412 + EX28DRAFT_2797 0.43 +0.3 99,955 + +1.6 99,960 - -0.2 99,960 - +0.5 100,133 - EX28DRAFT_2798 0.12 +0.2 100,133 - EX28DRAFT_2798 0.12 -0.1 100,133 - EX28DRAFT_2798 0.12 +0.1 100,560 - EX28DRAFT_2798 0.40 +0.4 100,751 + EX28DRAFT_2798 0.52 +0.1 100,751 + EX28DRAFT_2798 0.52 +0.4
Or see this region's nucleotide sequence