Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2766 and EX28DRAFT_2767 are separated by 313 nucleotides EX28DRAFT_2767 and EX28DRAFT_2768 are separated by 126 nucleotides EX28DRAFT_2768 and EX28DRAFT_2769 are separated by 16 nucleotides
EX28DRAFT_2766: EX28DRAFT_2766 - Arabinose efflux permease, at 73,689 to 74,873
_2766
EX28DRAFT_2767: EX28DRAFT_2767 - Transcriptional regulators, at 75,187 to 75,717
_2767
EX28DRAFT_2768: EX28DRAFT_2768 - efflux pump membrane protein (multidrug resistance protein A), at 75,844 to 77,016
_2768
EX28DRAFT_2769: EX28DRAFT_2769 - drug resistance transporter, EmrB/QacA subfamily, at 77,033 to 78,580
_2769
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -1
0
1
2 at 74.868 kb on - strand at 74.868 kb on - strand at 74.971 kb on + strand at 74.972 kb on - strand at 74.972 kb on - strand at 74.975 kb on + strand at 74.976 kb on - strand at 74.991 kb on - strand at 75.094 kb on + strand at 75.094 kb on + strand at 75.094 kb on + strand at 75.095 kb on - strand at 75.095 kb on - strand at 75.108 kb on - strand at 75.109 kb on + strand at 75.122 kb on - strand at 75.131 kb on - strand at 75.305 kb on + strand, within EX28DRAFT_2767 at 75.840 kb on + strand at 75.841 kb on - strand at 75.841 kb on - strand at 75.841 kb on - strand at 75.904 kb on - strand at 75.937 kb on - strand at 75.943 kb on - strand at 75.943 kb on - strand at 75.964 kb on + strand, within EX28DRAFT_2768 at 75.965 kb on - strand, within EX28DRAFT_2768 at 75.965 kb on - strand, within EX28DRAFT_2768 at 75.977 kb on + strand, within EX28DRAFT_2768 at 75.978 kb on - strand, within EX28DRAFT_2768 at 76.009 kb on + strand, within EX28DRAFT_2768 at 76.516 kb on + strand, within EX28DRAFT_2768 at 76.516 kb on + strand, within EX28DRAFT_2768 at 76.517 kb on - strand, within EX28DRAFT_2768 at 76.679 kb on - strand, within EX28DRAFT_2768 at 76.697 kb on - strand, within EX28DRAFT_2768 at 76.863 kb on + strand, within EX28DRAFT_2768 at 76.944 kb on + strand at 76.944 kb on + strand at 77.206 kb on + strand, within EX28DRAFT_2769 at 77.419 kb on - strand, within EX28DRAFT_2769 at 77.507 kb on - strand, within EX28DRAFT_2769 at 77.522 kb on - strand, within EX28DRAFT_2769 at 77.534 kb on + strand, within EX28DRAFT_2769 at 77.535 kb on - strand, within EX28DRAFT_2769 at 77.535 kb on - strand, within EX28DRAFT_2769 at 77.535 kb on - strand, within EX28DRAFT_2769 at 77.589 kb on + strand, within EX28DRAFT_2769 at 77.589 kb on + strand, within EX28DRAFT_2769 at 77.856 kb on + strand, within EX28DRAFT_2769 at 77.870 kb on - strand, within EX28DRAFT_2769 at 77.870 kb on - strand, within EX28DRAFT_2769 at 77.873 kb on - strand, within EX28DRAFT_2769 at 77.882 kb on + strand, within EX28DRAFT_2769 at 77.883 kb on - strand, within EX28DRAFT_2769 at 77.891 kb on + strand, within EX28DRAFT_2769 at 77.892 kb on - strand, within EX28DRAFT_2769 at 77.907 kb on + strand, within EX28DRAFT_2769 at 77.934 kb on + strand, within EX28DRAFT_2769 at 77.935 kb on - strand, within EX28DRAFT_2769 at 77.937 kb on - strand, within EX28DRAFT_2769 at 77.942 kb on + strand, within EX28DRAFT_2769
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 74,868 - -0.6 74,868 - -1.0 74,971 + -0.3 74,972 - +0.6 74,972 - -1.0 74,975 + +0.0 74,976 - -0.3 74,991 - +0.5 75,094 + -0.3 75,094 + +0.1 75,094 + -0.2 75,095 - -0.2 75,095 - +0.1 75,108 - -0.5 75,109 + +0.2 75,122 - -0.1 75,131 - -0.4 75,305 + EX28DRAFT_2767 0.22 +2.0 75,840 + -1.1 75,841 - +0.3 75,841 - +0.1 75,841 - +0.1 75,904 - -0.4 75,937 - -0.6 75,943 - -0.2 75,943 - +1.9 75,964 + EX28DRAFT_2768 0.10 +0.0 75,965 - EX28DRAFT_2768 0.10 +1.2 75,965 - EX28DRAFT_2768 0.10 -0.3 75,977 + EX28DRAFT_2768 0.11 +0.7 75,978 - EX28DRAFT_2768 0.11 -0.4 76,009 + EX28DRAFT_2768 0.14 -0.1 76,516 + EX28DRAFT_2768 0.57 -0.4 76,516 + EX28DRAFT_2768 0.57 +1.3 76,517 - EX28DRAFT_2768 0.57 +2.6 76,679 - EX28DRAFT_2768 0.71 +1.6 76,697 - EX28DRAFT_2768 0.73 +0.3 76,863 + EX28DRAFT_2768 0.87 +0.2 76,944 + +0.7 76,944 + +0.8 77,206 + EX28DRAFT_2769 0.11 -0.5 77,419 - EX28DRAFT_2769 0.25 +0.7 77,507 - EX28DRAFT_2769 0.31 +0.9 77,522 - EX28DRAFT_2769 0.32 +0.1 77,534 + EX28DRAFT_2769 0.32 +0.5 77,535 - EX28DRAFT_2769 0.32 +0.4 77,535 - EX28DRAFT_2769 0.32 +0.5 77,535 - EX28DRAFT_2769 0.32 +0.4 77,589 + EX28DRAFT_2769 0.36 -0.7 77,589 + EX28DRAFT_2769 0.36 +1.5 77,856 + EX28DRAFT_2769 0.53 +0.3 77,870 - EX28DRAFT_2769 0.54 -0.7 77,870 - EX28DRAFT_2769 0.54 +0.4 77,873 - EX28DRAFT_2769 0.54 +2.0 77,882 + EX28DRAFT_2769 0.55 -0.1 77,883 - EX28DRAFT_2769 0.55 +0.2 77,891 + EX28DRAFT_2769 0.55 -0.4 77,892 - EX28DRAFT_2769 0.55 +0.9 77,907 + EX28DRAFT_2769 0.56 +0.3 77,934 + EX28DRAFT_2769 0.58 +0.9 77,935 - EX28DRAFT_2769 0.58 +0.4 77,937 - EX28DRAFT_2769 0.58 +0.4 77,942 + EX28DRAFT_2769 0.59 -0.6
Or see this region's nucleotide sequence