Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2714

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2713 and EX28DRAFT_2714 are separated by 91 nucleotidesEX28DRAFT_2714 and EX28DRAFT_2715 are separated by 64 nucleotides EX28DRAFT_2713: EX28DRAFT_2713 - signal recognition particle subunit FFH/SRP54 (srp54), at 18,002 to 19,363 _2713 EX28DRAFT_2714: EX28DRAFT_2714 - ABC-type uncharacterized transport system, permease component, at 19,455 to 20,321 _2714 EX28DRAFT_2715: EX28DRAFT_2715 - Putative Mg2+ and Co2+ transporter CorB, at 20,386 to 21,627 _2715 Position (kb) 19 20 21Strain fitness (log2 ratio) -2 -1 0 1at 19.430 kb on - strandat 19.489 kb on + strandat 19.490 kb on - strandat 19.505 kb on + strandat 19.506 kb on - strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.527 kb on + strandat 19.528 kb on - strandat 19.528 kb on - strandat 19.529 kb on + strandat 19.529 kb on + strandat 19.530 kb on - strandat 19.820 kb on + strand, within EX28DRAFT_2714at 19.820 kb on + strand, within EX28DRAFT_2714at 19.986 kb on + strand, within EX28DRAFT_2714at 20.119 kb on - strand, within EX28DRAFT_2714at 20.187 kb on + strand, within EX28DRAFT_2714at 20.188 kb on - strand, within EX28DRAFT_2714at 20.188 kb on - strand, within EX28DRAFT_2714at 20.189 kb on + strand, within EX28DRAFT_2714at 20.189 kb on + strand, within EX28DRAFT_2714at 20.189 kb on + strand, within EX28DRAFT_2714at 20.189 kb on + strand, within EX28DRAFT_2714at 20.190 kb on - strand, within EX28DRAFT_2714at 20.190 kb on - strand, within EX28DRAFT_2714at 20.190 kb on - strand, within EX28DRAFT_2714at 20.283 kb on + strandat 20.284 kb on - strandat 20.302 kb on + strandat 20.303 kb on - strandat 20.320 kb on - strandat 20.355 kb on + strandat 20.454 kb on - strandat 20.466 kb on + strandat 20.467 kb on - strandat 20.467 kb on - strandat 20.529 kb on - strand, within EX28DRAFT_2715at 21.178 kb on + strand, within EX28DRAFT_2715at 21.182 kb on - strand, within EX28DRAFT_2715at 21.265 kb on + strand, within EX28DRAFT_2715at 21.300 kb on + strand, within EX28DRAFT_2715at 21.301 kb on - strand, within EX28DRAFT_2715

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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19,430 - -0.1
19,489 + +0.1
19,490 - -1.2
19,505 + -0.4
19,506 - -0.6
19,527 + -0.9
19,527 + -0.0
19,527 + -1.3
19,527 + -0.6
19,527 + -0.3
19,527 + +0.3
19,527 + +0.4
19,527 + +0.3
19,527 + +0.7
19,528 - -0.2
19,528 - -0.4
19,529 + -0.9
19,529 + +0.9
19,530 - -0.5
19,820 + EX28DRAFT_2714 0.42 -1.2
19,820 + EX28DRAFT_2714 0.42 -2.6
19,986 + EX28DRAFT_2714 0.61 -0.6
20,119 - EX28DRAFT_2714 0.77 -0.2
20,187 + EX28DRAFT_2714 0.84 -1.0
20,188 - EX28DRAFT_2714 0.85 -2.2
20,188 - EX28DRAFT_2714 0.85 -1.4
20,189 + EX28DRAFT_2714 0.85 -0.3
20,189 + EX28DRAFT_2714 0.85 -1.8
20,189 + EX28DRAFT_2714 0.85 -1.4
20,189 + EX28DRAFT_2714 0.85 -1.8
20,190 - EX28DRAFT_2714 0.85 -1.3
20,190 - EX28DRAFT_2714 0.85 -2.1
20,190 - EX28DRAFT_2714 0.85 -1.8
20,283 + +0.9
20,284 - -1.2
20,302 + +0.5
20,303 - -1.1
20,320 - -0.1
20,355 + +0.0
20,454 - -0.9
20,466 + -0.1
20,467 - +0.1
20,467 - -0.9
20,529 - EX28DRAFT_2715 0.12 -0.0
21,178 + EX28DRAFT_2715 0.64 +0.5
21,182 - EX28DRAFT_2715 0.64 -0.4
21,265 + EX28DRAFT_2715 0.71 +0.3
21,300 + EX28DRAFT_2715 0.74 -0.6
21,301 - EX28DRAFT_2715 0.74 -0.8

Or see this region's nucleotide sequence