Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2713 and EX28DRAFT_2714 are separated by 91 nucleotides EX28DRAFT_2714 and EX28DRAFT_2715 are separated by 64 nucleotides
EX28DRAFT_2713: EX28DRAFT_2713 - signal recognition particle subunit FFH/SRP54 (srp54), at 18,002 to 19,363
_2713
EX28DRAFT_2714: EX28DRAFT_2714 - ABC-type uncharacterized transport system, permease component, at 19,455 to 20,321
_2714
EX28DRAFT_2715: EX28DRAFT_2715 - Putative Mg2+ and Co2+ transporter CorB, at 20,386 to 21,627
_2715
Position (kb)
19
20
21 Strain fitness (log2 ratio)
-2
-1
0
1 at 19.430 kb on - strand at 19.489 kb on + strand at 19.490 kb on - strand at 19.505 kb on + strand at 19.506 kb on - strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.528 kb on - strand at 19.528 kb on - strand at 19.529 kb on + strand at 19.529 kb on + strand at 19.530 kb on - strand at 19.820 kb on + strand, within EX28DRAFT_2714 at 19.820 kb on + strand, within EX28DRAFT_2714 at 19.986 kb on + strand, within EX28DRAFT_2714 at 20.119 kb on - strand, within EX28DRAFT_2714 at 20.187 kb on + strand, within EX28DRAFT_2714 at 20.188 kb on - strand, within EX28DRAFT_2714 at 20.188 kb on - strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.190 kb on - strand, within EX28DRAFT_2714 at 20.190 kb on - strand, within EX28DRAFT_2714 at 20.190 kb on - strand, within EX28DRAFT_2714 at 20.283 kb on + strand at 20.284 kb on - strand at 20.302 kb on + strand at 20.303 kb on - strand at 20.320 kb on - strand at 20.355 kb on + strand at 20.454 kb on - strand at 20.466 kb on + strand at 20.467 kb on - strand at 20.467 kb on - strand at 20.529 kb on - strand, within EX28DRAFT_2715 at 21.178 kb on + strand, within EX28DRAFT_2715 at 21.182 kb on - strand, within EX28DRAFT_2715 at 21.265 kb on + strand, within EX28DRAFT_2715 at 21.300 kb on + strand, within EX28DRAFT_2715 at 21.301 kb on - strand, within EX28DRAFT_2715
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 19,430 - -0.1 19,489 + +0.1 19,490 - -1.2 19,505 + -0.4 19,506 - -0.6 19,527 + -0.9 19,527 + -0.0 19,527 + -1.3 19,527 + -0.6 19,527 + -0.3 19,527 + +0.3 19,527 + +0.4 19,527 + +0.3 19,527 + +0.7 19,528 - -0.2 19,528 - -0.4 19,529 + -0.9 19,529 + +0.9 19,530 - -0.5 19,820 + EX28DRAFT_2714 0.42 -1.2 19,820 + EX28DRAFT_2714 0.42 -2.6 19,986 + EX28DRAFT_2714 0.61 -0.6 20,119 - EX28DRAFT_2714 0.77 -0.2 20,187 + EX28DRAFT_2714 0.84 -1.0 20,188 - EX28DRAFT_2714 0.85 -2.2 20,188 - EX28DRAFT_2714 0.85 -1.4 20,189 + EX28DRAFT_2714 0.85 -0.3 20,189 + EX28DRAFT_2714 0.85 -1.8 20,189 + EX28DRAFT_2714 0.85 -1.4 20,189 + EX28DRAFT_2714 0.85 -1.8 20,190 - EX28DRAFT_2714 0.85 -1.3 20,190 - EX28DRAFT_2714 0.85 -2.1 20,190 - EX28DRAFT_2714 0.85 -1.8 20,283 + +0.9 20,284 - -1.2 20,302 + +0.5 20,303 - -1.1 20,320 - -0.1 20,355 + +0.0 20,454 - -0.9 20,466 + -0.1 20,467 - +0.1 20,467 - -0.9 20,529 - EX28DRAFT_2715 0.12 -0.0 21,178 + EX28DRAFT_2715 0.64 +0.5 21,182 - EX28DRAFT_2715 0.64 -0.4 21,265 + EX28DRAFT_2715 0.71 +0.3 21,300 + EX28DRAFT_2715 0.74 -0.6 21,301 - EX28DRAFT_2715 0.74 -0.8
Or see this region's nucleotide sequence