Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2707 and EX28DRAFT_2708 are separated by 39 nucleotides EX28DRAFT_2708 and EX28DRAFT_2709 are separated by 132 nucleotides EX28DRAFT_2709 and EX28DRAFT_2710 are separated by 43 nucleotides
EX28DRAFT_2707: EX28DRAFT_2707 - Uncharacterized iron-regulated membrane protein, at 13,945 to 15,315
_2707
EX28DRAFT_2708: EX28DRAFT_2708 - Protein of unknown function (DUF2946), at 15,355 to 15,759
_2708
EX28DRAFT_2709: EX28DRAFT_2709 - ribosomal protein L19, bacterial type, at 15,892 to 16,239
_2709
EX28DRAFT_2710: EX28DRAFT_2710 - tRNA (guanine-N1)-methyltransferase, at 16,283 to 17,050
_2710
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 14.787 kb on - strand, within EX28DRAFT_2707 at 14.787 kb on - strand, within EX28DRAFT_2707 at 14.850 kb on - strand, within EX28DRAFT_2707 at 14.883 kb on + strand, within EX28DRAFT_2707 at 14.884 kb on - strand, within EX28DRAFT_2707 at 14.884 kb on - strand, within EX28DRAFT_2707 at 14.884 kb on - strand, within EX28DRAFT_2707 at 14.891 kb on + strand, within EX28DRAFT_2707 at 14.934 kb on - strand, within EX28DRAFT_2707 at 14.943 kb on + strand, within EX28DRAFT_2707 at 14.983 kb on - strand, within EX28DRAFT_2707 at 15.033 kb on + strand, within EX28DRAFT_2707 at 15.200 kb on + strand at 15.200 kb on + strand at 15.201 kb on - strand at 15.310 kb on - strand at 15.533 kb on + strand, within EX28DRAFT_2708 at 15.567 kb on + strand, within EX28DRAFT_2708 at 15.748 kb on + strand at 15.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 14,787 - EX28DRAFT_2707 0.61 -1.9 14,787 - EX28DRAFT_2707 0.61 -0.2 14,850 - EX28DRAFT_2707 0.66 -1.4 14,883 + EX28DRAFT_2707 0.68 -1.3 14,884 - EX28DRAFT_2707 0.68 -0.3 14,884 - EX28DRAFT_2707 0.68 -0.2 14,884 - EX28DRAFT_2707 0.68 +0.5 14,891 + EX28DRAFT_2707 0.69 -2.8 14,934 - EX28DRAFT_2707 0.72 -0.1 14,943 + EX28DRAFT_2707 0.73 -0.3 14,983 - EX28DRAFT_2707 0.76 +0.3 15,033 + EX28DRAFT_2707 0.79 +0.7 15,200 + -0.8 15,200 + -0.5 15,201 - -0.7 15,310 - +0.0 15,533 + EX28DRAFT_2708 0.44 +0.6 15,567 + EX28DRAFT_2708 0.52 +0.1 15,748 + -1.4 15,812 - -0.9
Or see this region's nucleotide sequence