Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2252

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2251 and EX28DRAFT_2252 are separated by 134 nucleotidesEX28DRAFT_2252 and EX28DRAFT_2253 are separated by 28 nucleotidesEX28DRAFT_2253 and EX28DRAFT_2254 are separated by 3 nucleotides EX28DRAFT_2251: EX28DRAFT_2251 - tol-pal system beta propeller repeat protein TolB, at 2,271,549 to 2,272,841 _2251 EX28DRAFT_2252: EX28DRAFT_2252 - TolA protein, at 2,272,976 to 2,274,262 _2252 EX28DRAFT_2253: EX28DRAFT_2253 - TolR protein, at 2,274,291 to 2,274,719 _2253 EX28DRAFT_2254: EX28DRAFT_2254 - TolQ protein, at 2,274,723 to 2,275,415 _2254 Position (kb) 2272 2273 2274 2275Strain fitness (log2 ratio) -3 -2 -1 0 1at 2272.845 kb on - strandat 2272.877 kb on - strandat 2272.877 kb on - strandat 2272.906 kb on - strandat 2272.977 kb on + strandat 2272.978 kb on - strandat 2273.260 kb on + strand, within EX28DRAFT_2252at 2274.152 kb on - strandat 2274.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,272,845 - -1.7
2,272,877 - +0.7
2,272,877 - +0.0
2,272,906 - -0.2
2,272,977 + -0.2
2,272,978 - +0.0
2,273,260 + EX28DRAFT_2252 0.22 -3.2
2,274,152 - -2.9
2,274,297 - +0.1

Or see this region's nucleotide sequence