Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2190

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
2,210,277	+		EX28DRAFT_2188	0.73	+0.4
2,210,277	+		EX28DRAFT_2188	0.73	-0.7
2,210,277	+		EX28DRAFT_2188	0.73	-2.8
2,210,278	-		EX28DRAFT_2188	0.73	+0.2
2,210,299	+		EX28DRAFT_2188	0.77	+0.0
2,210,299	+		EX28DRAFT_2188	0.77	+0.2
2,210,405	-				-1.0
2,210,465	-				+0.6
2,210,507	+				-0.0
2,210,631	+		EX28DRAFT_2189	0.21	-0.5
2,210,805	+		EX28DRAFT_2189	0.47	+0.1
2,210,844	+		EX28DRAFT_2189	0.52	+0.2
2,210,952	+		EX28DRAFT_2189	0.68	-0.2
2,210,986	+		EX28DRAFT_2189	0.73	-0.2
2,210,987	-		EX28DRAFT_2189	0.73	-0.4
2,211,054	+		EX28DRAFT_2189	0.83	-4.0
2,211,055	-		EX28DRAFT_2189	0.84	-1.1
2,211,171	+				-0.2
2,211,171	+				+1.2
2,211,195	-				-0.1
2,211,195	-				+0.7
2,211,195	-				+0.9
2,211,205	+				+0.1
2,211,206	-				-0.4
2,211,216	+				-0.2
2,211,296	+				-0.8
2,211,297	-				-0.6
2,211,302	-				-0.5
2,211,392	+				-1.4
2,211,393	-				+0.2
2,211,421	+				+0.7
2,211,627	+		EX28DRAFT_2190	0.17	+0.4
2,211,628	-		EX28DRAFT_2190	0.17	-0.1
2,211,725	+		EX28DRAFT_2190	0.21	+0.1
2,211,725	+		EX28DRAFT_2190	0.21	+0.3
2,211,725	+		EX28DRAFT_2190	0.21	+0.5
2,211,725	+		EX28DRAFT_2190	0.21	+0.2
2,211,725	+		EX28DRAFT_2190	0.21	+1.3
2,211,726	-		EX28DRAFT_2190	0.21	-0.0
2,211,726	-		EX28DRAFT_2190	0.21	+0.3
2,211,727	+		EX28DRAFT_2190	0.21	+2.0
2,211,728	-		EX28DRAFT_2190	0.21	+0.2
2,211,791	-		EX28DRAFT_2190	0.24	+0.4
2,211,836	-		EX28DRAFT_2190	0.25	-1.4
2,211,839	+		EX28DRAFT_2190	0.25	+0.5
2,211,840	-		EX28DRAFT_2190	0.26	+3.7
2,211,840	-		EX28DRAFT_2190	0.26	+1.5
2,211,899	+		EX28DRAFT_2190	0.28	-0.4
2,211,899	+		EX28DRAFT_2190	0.28	+0.0
2,211,899	+		EX28DRAFT_2190	0.28	+1.0
2,211,899	+		EX28DRAFT_2190	0.28	+0.5
2,211,900	-		EX28DRAFT_2190	0.28	+0.3
2,211,901	+		EX28DRAFT_2190	0.28	+0.2
2,211,901	+		EX28DRAFT_2190	0.28	+0.3
2,211,901	+		EX28DRAFT_2190	0.28	+0.6
2,211,901	+		EX28DRAFT_2190	0.28	+0.5
2,211,901	+		EX28DRAFT_2190	0.28	-0.2
2,211,902	-		EX28DRAFT_2190	0.28	+0.4
2,211,902	-		EX28DRAFT_2190	0.28	+0.6
2,211,902	-		EX28DRAFT_2190	0.28	+0.7
2,211,902	-		EX28DRAFT_2190	0.28	+0.8
2,211,902	-		EX28DRAFT_2190	0.28	+3.7
2,211,902	-		EX28DRAFT_2190	0.28	+0.4
2,211,905	+		EX28DRAFT_2190	0.28	-0.1
2,211,905	+		EX28DRAFT_2190	0.28	-0.2
2,211,906	-		EX28DRAFT_2190	0.28	+0.4
2,211,906	-		EX28DRAFT_2190	0.28	+0.2
2,211,906	-		EX28DRAFT_2190	0.28	+0.7
2,211,906	-		EX28DRAFT_2190	0.28	-0.0
2,211,993	-		EX28DRAFT_2190	0.32	+0.4
2,212,112	+		EX28DRAFT_2190	0.36	-0.8
2,212,121	+		EX28DRAFT_2190	0.37	+1.2
2,212,166	+		EX28DRAFT_2190	0.38	-1.1
2,212,282	+		EX28DRAFT_2190	0.43	+0.2
2,212,283	-		EX28DRAFT_2190	0.43	-0.3
2,212,283	-		EX28DRAFT_2190	0.43	-0.6
2,212,286	+		EX28DRAFT_2190	0.43	-0.5
2,212,286	+		EX28DRAFT_2190	0.43	-0.2
2,212,286	+		EX28DRAFT_2190	0.43	-0.2
2,212,286	+		EX28DRAFT_2190	0.43	+0.5
2,212,287	-		EX28DRAFT_2190	0.43	+0.1
2,212,364	+		EX28DRAFT_2190	0.46	+0.2
2,212,364	+		EX28DRAFT_2190	0.46	+0.5
2,212,365	-		EX28DRAFT_2190	0.46	+0.7
2,212,477	-		EX28DRAFT_2190	0.51	+0.1
2,212,547	+		EX28DRAFT_2190	0.53	+0.3
2,212,559	-		EX28DRAFT_2190	0.54	-0.0
2,212,601	+		EX28DRAFT_2190	0.55	-0.5
2,212,602	-		EX28DRAFT_2190	0.55	+0.6
2,212,619	+		EX28DRAFT_2190	0.56	-0.6
2,212,619	+		EX28DRAFT_2190	0.56	+0.7
2,212,787	-		EX28DRAFT_2190	0.63	-1.4
2,212,808	+		EX28DRAFT_2190	0.64	+1.2
2,212,816	+		EX28DRAFT_2190	0.64	+0.6
2,212,816	+		EX28DRAFT_2190	0.64	-0.2
2,212,817	-		EX28DRAFT_2190	0.64	+0.1
2,212,817	-		EX28DRAFT_2190	0.64	+2.4
2,212,817	-		EX28DRAFT_2190	0.64	-0.6
2,212,835	+		EX28DRAFT_2190	0.65	-0.0
2,212,835	+		EX28DRAFT_2190	0.65	-0.2
2,212,836	-		EX28DRAFT_2190	0.65	-0.7
2,212,836	-		EX28DRAFT_2190	0.65	-0.5
2,212,836	-		EX28DRAFT_2190	0.65	+0.6
2,212,836	-		EX28DRAFT_2190	0.65	+0.2
2,212,836	-		EX28DRAFT_2190	0.65	+0.1
2,212,901	+		EX28DRAFT_2190	0.67	-0.9
2,212,902	-		EX28DRAFT_2190	0.67	-0.0
2,212,970	+		EX28DRAFT_2190	0.70	+1.1
2,212,987	+		EX28DRAFT_2190	0.71	+0.1
2,212,987	+		EX28DRAFT_2190	0.71	+0.0
2,213,095	+		EX28DRAFT_2190	0.75	+0.4
2,213,126	+		EX28DRAFT_2190	0.76	-0.1
2,213,170	+		EX28DRAFT_2190	0.78	-0.7
2,213,327	+		EX28DRAFT_2190	0.84	+0.4
2,213,329	+		EX28DRAFT_2190	0.84	-0.2
2,213,368	-		EX28DRAFT_2190	0.86	+0.3
2,213,708	-				+0.1
2,213,736	+				-0.6
2,213,762	+				-0.0
2,213,763	-				-0.1
2,213,781	-				+0.2
2,213,781	-				-0.0
2,213,781	-				-0.0
2,213,786	+				-0.2
2,213,786	+				+0.5
2,213,786	+				-0.3
2,213,812	-				-0.3
2,213,874	+		EX28DRAFT_2191	0.12	+0.5
2,213,882	+		EX28DRAFT_2191	0.13	-1.0
2,213,886	+		EX28DRAFT_2191	0.13	-0.0
2,213,886	+		EX28DRAFT_2191	0.13	+1.1
2,213,887	-		EX28DRAFT_2191	0.14	-1.0
2,213,953	+		EX28DRAFT_2191	0.20	-0.6
2,213,953	+		EX28DRAFT_2191	0.20	+1.2
2,213,953	+		EX28DRAFT_2191	0.20	-0.8
2,213,954	-		EX28DRAFT_2191	0.20	-0.6
2,213,954	-		EX28DRAFT_2191	0.20	-0.4
2,213,954	-		EX28DRAFT_2191	0.20	-0.3
2,213,955	+		EX28DRAFT_2191	0.20	-1.8
2,213,955	+		EX28DRAFT_2191	0.20	+0.3
2,213,955	+		EX28DRAFT_2191	0.20	+0.5
2,213,956	-		EX28DRAFT_2191	0.20	+0.2
2,213,956	-		EX28DRAFT_2191	0.20	-0.5
2,213,956	-		EX28DRAFT_2191	0.20	-0.7
2,214,034	+		EX28DRAFT_2191	0.28	+0.2
2,214,035	-		EX28DRAFT_2191	0.28	-0.8
2,214,075	+		EX28DRAFT_2191	0.32	-0.2
2,214,252	+		EX28DRAFT_2191	0.50	-0.1
2,214,281	+		EX28DRAFT_2191	0.53	-0.7
2,214,313	+		EX28DRAFT_2191	0.56	+1.1
2,214,353	+		EX28DRAFT_2191	0.60	+0.6
2,214,470	+		EX28DRAFT_2191	0.72	+0.7
2,214,470	+		EX28DRAFT_2191	0.72	+0.4
2,214,470	+		EX28DRAFT_2191	0.72	-0.5
2,214,471	-		EX28DRAFT_2191	0.72	-0.3
2,214,536	+		EX28DRAFT_2191	0.79	+0.3
2,214,613	+		EX28DRAFT_2191	0.86	+0.4
2,214,613	+		EX28DRAFT_2191	0.86	-2.1
2,214,613	+		EX28DRAFT_2191	0.86	-1.1
2,214,614	-		EX28DRAFT_2191	0.87	-0.0
2,214,614	-		EX28DRAFT_2191	0.87	-0.2
2,214,615	+		EX28DRAFT_2191	0.87	-1.1
2,214,615	+		EX28DRAFT_2191	0.87	-0.9
2,214,616	-		EX28DRAFT_2191	0.87	-0.0
2,214,616	-		EX28DRAFT_2191	0.87	-1.3
2,214,616	-		EX28DRAFT_2191	0.87	-0.6
2,214,616	-		EX28DRAFT_2191	0.87	-0.5
2,214,616	-		EX28DRAFT_2191	0.87	-1.3
2,214,616	-		EX28DRAFT_2191	0.87	+0.5
2,214,616	-		EX28DRAFT_2191	0.87	-1.2
2,214,616	-		EX28DRAFT_2191	0.87	-0.3
2,214,616	-		EX28DRAFT_2191	0.87	-1.9
2,214,655	+				-0.3
2,214,656	-				+0.7