Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1988 and EX28DRAFT_1989 overlap by 40 nucleotides EX28DRAFT_1989 and EX28DRAFT_1990 are separated by 71 nucleotides EX28DRAFT_1990 and EX28DRAFT_1991 are separated by 255 nucleotides EX28DRAFT_1991 and EX28DRAFT_1992 overlap by 4 nucleotides
EX28DRAFT_1988: EX28DRAFT_1988 - Predicted ATP-dependent protease, at 1,989,377 to 1,991,137
_1988
EX28DRAFT_1989: EX28DRAFT_1989 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60), at 1,991,098 to 1,991,724
_1989
EX28DRAFT_1990: EX28DRAFT_1990 - Ribosome modulation factor, at 1,991,796 to 1,991,963
_1990
EX28DRAFT_1991: EX28DRAFT_1991 - Uncharacterized protein conserved in bacteria, at 1,992,219 to 1,992,785
_1991
EX28DRAFT_1992: EX28DRAFT_1992 - Paraquat-inducible protein B, at 1,992,782 to 1,994,422
_1992
Position (kb) 1991
1992 Strain fitness (log2 ratio) -2
-1
0
1 at 1990.858 kb on - strand, within EX28DRAFT_1988 at 1991.058 kb on + strand at 1992.090 kb on - strand at 1992.144 kb on - strand at 1992.216 kb on + strand at 1992.220 kb on + strand at 1992.221 kb on - strand at 1992.301 kb on + strand, within EX28DRAFT_1991 at 1992.302 kb on - strand, within EX28DRAFT_1991 at 1992.435 kb on - strand, within EX28DRAFT_1991 at 1992.571 kb on + strand, within EX28DRAFT_1991 at 1992.572 kb on - strand, within EX28DRAFT_1991 at 1992.572 kb on - strand, within EX28DRAFT_1991 at 1992.709 kb on + strand, within EX28DRAFT_1991 at 1992.713 kb on - strand, within EX28DRAFT_1991 at 1992.719 kb on + strand, within EX28DRAFT_1991 at 1992.719 kb on + strand, within EX28DRAFT_1991 at 1992.723 kb on - strand, within EX28DRAFT_1991 at 1992.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,990,858 - EX28DRAFT_1988 0.84 +0.3 1,991,058 + -0.4 1,992,090 - -0.2 1,992,144 - +0.1 1,992,216 + -1.0 1,992,220 + -1.3 1,992,221 - +0.4 1,992,301 + EX28DRAFT_1991 0.14 -1.0 1,992,302 - EX28DRAFT_1991 0.15 -0.8 1,992,435 - EX28DRAFT_1991 0.38 +0.3 1,992,571 + EX28DRAFT_1991 0.62 -0.1 1,992,572 - EX28DRAFT_1991 0.62 +0.6 1,992,572 - EX28DRAFT_1991 0.62 -0.4 1,992,709 + EX28DRAFT_1991 0.86 -0.6 1,992,713 - EX28DRAFT_1991 0.87 +0.8 1,992,719 + EX28DRAFT_1991 0.88 +0.8 1,992,719 + EX28DRAFT_1991 0.88 -2.1 1,992,723 - EX28DRAFT_1991 0.89 -0.4 1,992,930 + +0.5
Or see this region's nucleotide sequence