Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1980

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1978 and EX28DRAFT_1979 are separated by 173 nucleotidesEX28DRAFT_1979 and EX28DRAFT_1980 are separated by 80 nucleotidesEX28DRAFT_1980 and EX28DRAFT_1981 are separated by 57 nucleotides EX28DRAFT_1978: EX28DRAFT_1978 - Predicted CoA-binding protein, at 1,979,302 to 1,979,715 _1978 EX28DRAFT_1979: EX28DRAFT_1979 - Uncharacterized protein conserved in bacteria, at 1,979,889 to 1,980,551 _1979 EX28DRAFT_1980: EX28DRAFT_1980 - methylglyoxal synthase, at 1,980,632 to 1,981,090 _1980 EX28DRAFT_1981: EX28DRAFT_1981 - Superfamily I DNA and RNA helicases, at 1,981,148 to 1,983,202 _1981 Position (kb) 1980 1981 1982Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1979.700 kb on + strandat 1979.778 kb on + strandat 1979.807 kb on + strandat 1979.807 kb on + strandat 1979.808 kb on - strandat 1979.808 kb on - strandat 1979.808 kb on - strandat 1979.808 kb on - strandat 1979.813 kb on + strandat 1979.813 kb on + strandat 1979.814 kb on - strandat 1979.814 kb on - strandat 1979.814 kb on - strandat 1979.814 kb on - strandat 1979.815 kb on + strandat 1979.816 kb on - strandat 1979.816 kb on - strandat 1979.816 kb on - strandat 1979.816 kb on - strandat 1979.816 kb on - strandat 1979.816 kb on - strandat 1979.889 kb on - strandat 1979.986 kb on + strand, within EX28DRAFT_1979at 1979.987 kb on - strand, within EX28DRAFT_1979at 1980.117 kb on + strand, within EX28DRAFT_1979at 1980.117 kb on + strand, within EX28DRAFT_1979at 1980.117 kb on + strand, within EX28DRAFT_1979at 1980.118 kb on - strand, within EX28DRAFT_1979at 1980.118 kb on - strand, within EX28DRAFT_1979at 1980.118 kb on - strand, within EX28DRAFT_1979at 1980.118 kb on - strand, within EX28DRAFT_1979at 1980.146 kb on + strand, within EX28DRAFT_1979at 1980.282 kb on - strand, within EX28DRAFT_1979at 1980.339 kb on + strand, within EX28DRAFT_1979at 1980.339 kb on + strand, within EX28DRAFT_1979at 1980.340 kb on - strand, within EX28DRAFT_1979at 1980.549 kb on + strandat 1980.626 kb on - strandat 1980.626 kb on - strandat 1980.631 kb on + strandat 1980.697 kb on + strand, within EX28DRAFT_1980at 1980.698 kb on - strand, within EX28DRAFT_1980at 1980.713 kb on - strand, within EX28DRAFT_1980at 1980.713 kb on - strand, within EX28DRAFT_1980at 1980.713 kb on - strand, within EX28DRAFT_1980at 1980.713 kb on - strand, within EX28DRAFT_1980at 1980.970 kb on + strand, within EX28DRAFT_1980at 1981.048 kb on + strandat 1981.049 kb on - strandat 1981.059 kb on - strandat 1981.127 kb on + strandat 1981.150 kb on - strandat 1981.177 kb on + strandat 1981.263 kb on + strandat 1981.392 kb on + strand, within EX28DRAFT_1981at 1981.393 kb on - strand, within EX28DRAFT_1981at 1981.430 kb on - strand, within EX28DRAFT_1981at 1981.486 kb on + strand, within EX28DRAFT_1981at 1981.487 kb on - strand, within EX28DRAFT_1981at 1981.487 kb on - strand, within EX28DRAFT_1981at 1981.516 kb on + strand, within EX28DRAFT_1981at 1981.517 kb on - strand, within EX28DRAFT_1981at 1981.600 kb on + strand, within EX28DRAFT_1981at 1981.786 kb on - strand, within EX28DRAFT_1981at 1981.826 kb on - strand, within EX28DRAFT_1981at 1981.903 kb on + strand, within EX28DRAFT_1981at 1981.903 kb on + strand, within EX28DRAFT_1981at 1981.903 kb on + strand, within EX28DRAFT_1981at 1981.948 kb on + strand, within EX28DRAFT_1981at 1981.948 kb on + strand, within EX28DRAFT_1981at 1981.949 kb on - strand, within EX28DRAFT_1981at 1981.949 kb on - strand, within EX28DRAFT_1981at 1981.949 kb on - strand, within EX28DRAFT_1981

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,979,700 + -0.3
1,979,778 + -0.5
1,979,807 + +0.6
1,979,807 + +0.9
1,979,808 - +0.8
1,979,808 - -0.7
1,979,808 - +0.5
1,979,808 - +0.4
1,979,813 + -1.0
1,979,813 + -0.3
1,979,814 - +0.4
1,979,814 - -0.5
1,979,814 - +0.4
1,979,814 - +0.3
1,979,815 + -0.5
1,979,816 - +0.4
1,979,816 - +4.7
1,979,816 - +0.2
1,979,816 - -0.1
1,979,816 - +0.2
1,979,816 - -0.9
1,979,889 - -0.0
1,979,986 + EX28DRAFT_1979 0.15 +0.3
1,979,987 - EX28DRAFT_1979 0.15 -0.1
1,980,117 + EX28DRAFT_1979 0.34 -0.3
1,980,117 + EX28DRAFT_1979 0.34 +0.5
1,980,117 + EX28DRAFT_1979 0.34 -2.1
1,980,118 - EX28DRAFT_1979 0.35 -0.2
1,980,118 - EX28DRAFT_1979 0.35 +0.4
1,980,118 - EX28DRAFT_1979 0.35 +0.1
1,980,118 - EX28DRAFT_1979 0.35 -0.2
1,980,146 + EX28DRAFT_1979 0.39 +0.4
1,980,282 - EX28DRAFT_1979 0.59 +0.1
1,980,339 + EX28DRAFT_1979 0.68 +0.2
1,980,339 + EX28DRAFT_1979 0.68 -0.2
1,980,340 - EX28DRAFT_1979 0.68 +1.7
1,980,549 + +0.1
1,980,626 - +0.7
1,980,626 - -0.1
1,980,631 + +0.8
1,980,697 + EX28DRAFT_1980 0.14 -0.5
1,980,698 - EX28DRAFT_1980 0.14 +0.7
1,980,713 - EX28DRAFT_1980 0.18 +0.4
1,980,713 - EX28DRAFT_1980 0.18 +0.6
1,980,713 - EX28DRAFT_1980 0.18 -0.4
1,980,713 - EX28DRAFT_1980 0.18 +0.4
1,980,970 + EX28DRAFT_1980 0.74 +1.6
1,981,048 + +4.1
1,981,049 - +0.2
1,981,059 - -0.2
1,981,127 + -0.3
1,981,150 - -0.3
1,981,177 + -0.3
1,981,263 + -0.2
1,981,392 + EX28DRAFT_1981 0.12 +0.4
1,981,393 - EX28DRAFT_1981 0.12 -0.0
1,981,430 - EX28DRAFT_1981 0.14 +0.3
1,981,486 + EX28DRAFT_1981 0.16 +0.3
1,981,487 - EX28DRAFT_1981 0.16 -1.5
1,981,487 - EX28DRAFT_1981 0.16 +0.0
1,981,516 + EX28DRAFT_1981 0.18 +0.1
1,981,517 - EX28DRAFT_1981 0.18 +0.5
1,981,600 + EX28DRAFT_1981 0.22 +2.0
1,981,786 - EX28DRAFT_1981 0.31 -0.5
1,981,826 - EX28DRAFT_1981 0.33 +0.2
1,981,903 + EX28DRAFT_1981 0.37 -2.2
1,981,903 + EX28DRAFT_1981 0.37 +0.4
1,981,903 + EX28DRAFT_1981 0.37 -2.0
1,981,948 + EX28DRAFT_1981 0.39 +1.4
1,981,948 + EX28DRAFT_1981 0.39 -1.1
1,981,949 - EX28DRAFT_1981 0.39 -0.3
1,981,949 - EX28DRAFT_1981 0.39 +0.1
1,981,949 - EX28DRAFT_1981 0.39 -1.0

Or see this region's nucleotide sequence