Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1934

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1933 and EX28DRAFT_1934 overlap by 4 nucleotidesEX28DRAFT_1934 and EX28DRAFT_1935 are separated by 13 nucleotidesEX28DRAFT_1935 and EX28DRAFT_1936 overlap by 20 nucleotides EX28DRAFT_1933: EX28DRAFT_1933 - amidase, hydantoinase/carbamoylase family, at 1,939,276 to 1,940,514 _1933 EX28DRAFT_1934: EX28DRAFT_1934 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 1,940,511 to 1,941,752 _1934 EX28DRAFT_1935: EX28DRAFT_1935 - ABC-type polar amino acid transport system, ATPase component, at 1,941,766 to 1,942,503 _1935 EX28DRAFT_1936: EX28DRAFT_1936 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,942,484 to 1,943,161 _1936 Position (kb) 1940 1941 1942Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1939.773 kb on + strand, within EX28DRAFT_1933at 1939.774 kb on - strand, within EX28DRAFT_1933at 1939.777 kb on - strand, within EX28DRAFT_1933at 1939.777 kb on - strand, within EX28DRAFT_1933at 1940.429 kb on + strandat 1940.588 kb on - strandat 1940.984 kb on - strand, within EX28DRAFT_1934at 1940.984 kb on - strand, within EX28DRAFT_1934at 1940.984 kb on - strand, within EX28DRAFT_1934at 1941.019 kb on + strand, within EX28DRAFT_1934at 1941.019 kb on + strand, within EX28DRAFT_1934at 1941.020 kb on - strand, within EX28DRAFT_1934at 1941.020 kb on - strand, within EX28DRAFT_1934at 1941.020 kb on - strand, within EX28DRAFT_1934at 1941.350 kb on + strand, within EX28DRAFT_1934at 1941.407 kb on + strand, within EX28DRAFT_1934at 1941.408 kb on - strand, within EX28DRAFT_1934at 1941.485 kb on + strand, within EX28DRAFT_1934at 1941.485 kb on + strand, within EX28DRAFT_1934at 1941.614 kb on - strand, within EX28DRAFT_1934at 1941.614 kb on - strand, within EX28DRAFT_1934at 1941.614 kb on - strand, within EX28DRAFT_1934at 1941.757 kb on + strandat 1941.874 kb on - strand, within EX28DRAFT_1935at 1941.928 kb on + strand, within EX28DRAFT_1935at 1941.928 kb on + strand, within EX28DRAFT_1935at 1942.104 kb on - strand, within EX28DRAFT_1935at 1942.104 kb on - strand, within EX28DRAFT_1935at 1942.469 kb on + strandat 1942.469 kb on + strandat 1942.470 kb on - strandat 1942.486 kb on - strandat 1942.555 kb on + strand, within EX28DRAFT_1936at 1942.556 kb on - strand, within EX28DRAFT_1936at 1942.556 kb on - strand, within EX28DRAFT_1936at 1942.600 kb on - strand, within EX28DRAFT_1936at 1942.676 kb on - strand, within EX28DRAFT_1936at 1942.676 kb on - strand, within EX28DRAFT_1936

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,939,773 + EX28DRAFT_1933 0.40 +0.3
1,939,774 - EX28DRAFT_1933 0.40 -0.1
1,939,777 - EX28DRAFT_1933 0.40 -2.0
1,939,777 - EX28DRAFT_1933 0.40 +0.2
1,940,429 + -0.6
1,940,588 - -0.5
1,940,984 - EX28DRAFT_1934 0.38 -0.5
1,940,984 - EX28DRAFT_1934 0.38 -0.2
1,940,984 - EX28DRAFT_1934 0.38 +0.6
1,941,019 + EX28DRAFT_1934 0.41 +0.0
1,941,019 + EX28DRAFT_1934 0.41 +0.4
1,941,020 - EX28DRAFT_1934 0.41 +0.1
1,941,020 - EX28DRAFT_1934 0.41 +1.1
1,941,020 - EX28DRAFT_1934 0.41 +0.4
1,941,350 + EX28DRAFT_1934 0.68 -0.0
1,941,407 + EX28DRAFT_1934 0.72 +0.6
1,941,408 - EX28DRAFT_1934 0.72 +0.5
1,941,485 + EX28DRAFT_1934 0.78 +2.1
1,941,485 + EX28DRAFT_1934 0.78 -0.5
1,941,614 - EX28DRAFT_1934 0.89 +0.8
1,941,614 - EX28DRAFT_1934 0.89 +0.4
1,941,614 - EX28DRAFT_1934 0.89 +0.4
1,941,757 + -0.1
1,941,874 - EX28DRAFT_1935 0.15 +0.3
1,941,928 + EX28DRAFT_1935 0.22 +1.1
1,941,928 + EX28DRAFT_1935 0.22 -0.0
1,942,104 - EX28DRAFT_1935 0.46 -0.7
1,942,104 - EX28DRAFT_1935 0.46 -0.7
1,942,469 + +0.8
1,942,469 + +0.8
1,942,470 - +4.1
1,942,486 - +0.3
1,942,555 + EX28DRAFT_1936 0.10 -0.4
1,942,556 - EX28DRAFT_1936 0.11 +0.3
1,942,556 - EX28DRAFT_1936 0.11 +0.3
1,942,600 - EX28DRAFT_1936 0.17 +0.7
1,942,676 - EX28DRAFT_1936 0.28 -0.1
1,942,676 - EX28DRAFT_1936 0.28 -0.0

Or see this region's nucleotide sequence