Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1917

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1915 and EX28DRAFT_1916 are separated by 11 nucleotidesEX28DRAFT_1916 and EX28DRAFT_1917 are separated by 7 nucleotidesEX28DRAFT_1917 and EX28DRAFT_1918 are separated by 9 nucleotidesEX28DRAFT_1918 and EX28DRAFT_1919 are separated by 9 nucleotides EX28DRAFT_1915: EX28DRAFT_1915 - pyrimidine utilization protein B, at 1,926,556 to 1,927,245 _1915 EX28DRAFT_1916: EX28DRAFT_1916 - pyrimidine utilization protein C, at 1,927,257 to 1,927,643 _1916 EX28DRAFT_1917: EX28DRAFT_1917 - pyrimidine utilization protein D, at 1,927,651 to 1,928,451 _1917 EX28DRAFT_1918: EX28DRAFT_1918 - Nitroreductase, at 1,928,461 to 1,929,051 _1918 EX28DRAFT_1919: EX28DRAFT_1919 - pyrimidine utilization flavin reductase protein F, at 1,929,061 to 1,929,555 _1919 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -1 0 1 2at 1927.090 kb on + strand, within EX28DRAFT_1915at 1927.341 kb on + strand, within EX28DRAFT_1916at 1927.341 kb on + strand, within EX28DRAFT_1916at 1927.342 kb on - strand, within EX28DRAFT_1916at 1927.342 kb on - strand, within EX28DRAFT_1916at 1927.389 kb on - strand, within EX28DRAFT_1916at 1927.512 kb on + strand, within EX28DRAFT_1916at 1927.533 kb on + strand, within EX28DRAFT_1916at 1927.533 kb on + strand, within EX28DRAFT_1916at 1927.650 kb on + strandat 1927.651 kb on - strandat 1927.704 kb on + strandat 1927.732 kb on + strand, within EX28DRAFT_1917at 1927.733 kb on - strand, within EX28DRAFT_1917at 1927.784 kb on - strand, within EX28DRAFT_1917at 1928.050 kb on + strand, within EX28DRAFT_1917at 1928.260 kb on - strand, within EX28DRAFT_1917at 1928.260 kb on - strand, within EX28DRAFT_1917at 1928.448 kb on - strandat 1928.449 kb on + strandat 1928.459 kb on + strandat 1928.570 kb on - strand, within EX28DRAFT_1918at 1928.791 kb on - strand, within EX28DRAFT_1918at 1928.852 kb on - strand, within EX28DRAFT_1918at 1929.075 kb on + strandat 1929.212 kb on + strand, within EX28DRAFT_1919at 1929.212 kb on + strand, within EX28DRAFT_1919at 1929.302 kb on + strand, within EX28DRAFT_1919at 1929.303 kb on - strand, within EX28DRAFT_1919

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,927,090 + EX28DRAFT_1915 0.77 -0.2
1,927,341 + EX28DRAFT_1916 0.22 +0.2
1,927,341 + EX28DRAFT_1916 0.22 +0.7
1,927,342 - EX28DRAFT_1916 0.22 -0.1
1,927,342 - EX28DRAFT_1916 0.22 -0.7
1,927,389 - EX28DRAFT_1916 0.34 -0.1
1,927,512 + EX28DRAFT_1916 0.66 +0.5
1,927,533 + EX28DRAFT_1916 0.71 -0.6
1,927,533 + EX28DRAFT_1916 0.71 +0.8
1,927,650 + +0.2
1,927,651 - +0.1
1,927,704 + -0.7
1,927,732 + EX28DRAFT_1917 0.10 +0.3
1,927,733 - EX28DRAFT_1917 0.10 +0.3
1,927,784 - EX28DRAFT_1917 0.17 +0.4
1,928,050 + EX28DRAFT_1917 0.50 -0.2
1,928,260 - EX28DRAFT_1917 0.76 +2.1
1,928,260 - EX28DRAFT_1917 0.76 +0.2
1,928,448 - +0.4
1,928,449 + +0.3
1,928,459 + +0.5
1,928,570 - EX28DRAFT_1918 0.18 -0.8
1,928,791 - EX28DRAFT_1918 0.56 -0.2
1,928,852 - EX28DRAFT_1918 0.66 +0.2
1,929,075 + +0.9
1,929,212 + EX28DRAFT_1919 0.31 -0.3
1,929,212 + EX28DRAFT_1919 0.31 -0.4
1,929,302 + EX28DRAFT_1919 0.49 -0.1
1,929,303 - EX28DRAFT_1919 0.49 +0.4

Or see this region's nucleotide sequence