Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1901

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1899 and EX28DRAFT_1900 are separated by 109 nucleotidesEX28DRAFT_1900 and EX28DRAFT_1901 are separated by 20 nucleotidesEX28DRAFT_1901 and EX28DRAFT_1902 are separated by 147 nucleotidesEX28DRAFT_1902 and EX28DRAFT_1903 are separated by 243 nucleotides EX28DRAFT_1899: EX28DRAFT_1899 - Transcriptional regulator, at 1,906,656 to 1,907,561 _1899 EX28DRAFT_1900: EX28DRAFT_1900 - Pirin-related protein, at 1,907,671 to 1,908,531 _1900 EX28DRAFT_1901: EX28DRAFT_1901 - Amidases related to nicotinamidase, at 1,908,552 to 1,909,229 _1901 EX28DRAFT_1902: EX28DRAFT_1902 - tRNA, at 1,909,377 to 1,909,464 _1902 EX28DRAFT_1903: EX28DRAFT_1903 - amino acid carrier protein, at 1,909,708 to 1,911,213 _1903 Position (kb) 1908 1909 1910Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1907.561 kb on + strandat 1907.561 kb on + strandat 1907.561 kb on + strandat 1907.666 kb on + strandat 1907.666 kb on + strandat 1907.667 kb on - strandat 1907.667 kb on - strandat 1907.752 kb on + strandat 1908.099 kb on + strand, within EX28DRAFT_1900at 1908.169 kb on + strand, within EX28DRAFT_1900at 1908.223 kb on - strand, within EX28DRAFT_1900at 1908.318 kb on + strand, within EX28DRAFT_1900at 1908.405 kb on - strand, within EX28DRAFT_1900at 1908.505 kb on - strandat 1908.536 kb on - strandat 1908.538 kb on + strandat 1908.539 kb on - strandat 1908.550 kb on + strandat 1908.620 kb on + strand, within EX28DRAFT_1901at 1908.810 kb on + strand, within EX28DRAFT_1901at 1908.811 kb on - strand, within EX28DRAFT_1901at 1908.811 kb on - strand, within EX28DRAFT_1901at 1908.884 kb on + strand, within EX28DRAFT_1901at 1908.962 kb on + strand, within EX28DRAFT_1901at 1908.963 kb on - strand, within EX28DRAFT_1901at 1908.997 kb on - strand, within EX28DRAFT_1901at 1909.131 kb on + strand, within EX28DRAFT_1901at 1909.131 kb on + strand, within EX28DRAFT_1901at 1909.131 kb on + strand, within EX28DRAFT_1901at 1909.132 kb on - strand, within EX28DRAFT_1901at 1909.132 kb on - strand, within EX28DRAFT_1901at 1909.174 kb on - strandat 1909.267 kb on - strandat 1909.330 kb on + strandat 1909.331 kb on - strandat 1909.331 kb on - strandat 1909.333 kb on + strandat 1909.469 kb on + strandat 1909.469 kb on + strandat 1909.510 kb on + strandat 1909.661 kb on + strandat 1909.663 kb on + strandat 1909.665 kb on + strandat 1909.666 kb on - strandat 1909.666 kb on - strandat 1909.680 kb on + strandat 1909.802 kb on + strandat 1909.816 kb on - strandat 1910.000 kb on + strand, within EX28DRAFT_1903at 1910.000 kb on + strand, within EX28DRAFT_1903at 1910.001 kb on - strand, within EX28DRAFT_1903at 1910.001 kb on - strand, within EX28DRAFT_1903at 1910.002 kb on + strand, within EX28DRAFT_1903at 1910.002 kb on + strand, within EX28DRAFT_1903at 1910.023 kb on + strand, within EX28DRAFT_1903at 1910.024 kb on - strand, within EX28DRAFT_1903at 1910.024 kb on - strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.097 kb on - strand, within EX28DRAFT_1903at 1910.097 kb on - strand, within EX28DRAFT_1903at 1910.097 kb on - strand, within EX28DRAFT_1903at 1910.099 kb on + strand, within EX28DRAFT_1903at 1910.099 kb on + strand, within EX28DRAFT_1903at 1910.100 kb on - strand, within EX28DRAFT_1903at 1910.100 kb on - strand, within EX28DRAFT_1903at 1910.100 kb on - strand, within EX28DRAFT_1903at 1910.109 kb on + strand, within EX28DRAFT_1903at 1910.154 kb on - strand, within EX28DRAFT_1903at 1910.154 kb on - strand, within EX28DRAFT_1903at 1910.157 kb on + strand, within EX28DRAFT_1903at 1910.176 kb on - strand, within EX28DRAFT_1903at 1910.176 kb on - strand, within EX28DRAFT_1903at 1910.198 kb on + strand, within EX28DRAFT_1903at 1910.198 kb on + strand, within EX28DRAFT_1903at 1910.199 kb on - strand, within EX28DRAFT_1903at 1910.199 kb on - strand, within EX28DRAFT_1903

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,907,561 + +1.0
1,907,561 + -2.1
1,907,561 + +0.2
1,907,666 + +0.4
1,907,666 + +0.8
1,907,667 - +0.8
1,907,667 - +0.9
1,907,752 + +0.3
1,908,099 + EX28DRAFT_1900 0.50 -0.2
1,908,169 + EX28DRAFT_1900 0.58 +0.5
1,908,223 - EX28DRAFT_1900 0.64 -0.7
1,908,318 + EX28DRAFT_1900 0.75 -0.6
1,908,405 - EX28DRAFT_1900 0.85 +0.9
1,908,505 - -2.2
1,908,536 - -0.9
1,908,538 + +0.3
1,908,539 - +0.1
1,908,550 + -0.7
1,908,620 + EX28DRAFT_1901 0.10 +0.1
1,908,810 + EX28DRAFT_1901 0.38 -0.5
1,908,811 - EX28DRAFT_1901 0.38 -0.2
1,908,811 - EX28DRAFT_1901 0.38 -0.6
1,908,884 + EX28DRAFT_1901 0.49 -0.4
1,908,962 + EX28DRAFT_1901 0.60 -0.5
1,908,963 - EX28DRAFT_1901 0.61 +0.3
1,908,997 - EX28DRAFT_1901 0.66 -1.2
1,909,131 + EX28DRAFT_1901 0.85 -0.4
1,909,131 + EX28DRAFT_1901 0.85 +0.2
1,909,131 + EX28DRAFT_1901 0.85 +0.1
1,909,132 - EX28DRAFT_1901 0.86 -0.3
1,909,132 - EX28DRAFT_1901 0.86 -0.7
1,909,174 - +0.1
1,909,267 - -0.1
1,909,330 + -0.1
1,909,331 - +0.3
1,909,331 - +0.6
1,909,333 + -0.4
1,909,469 + +0.5
1,909,469 + +1.0
1,909,510 + +0.7
1,909,661 + -0.7
1,909,663 + -0.1
1,909,665 + -0.1
1,909,666 - -0.1
1,909,666 - +1.8
1,909,680 + +0.6
1,909,802 + +0.3
1,909,816 - -0.8
1,910,000 + EX28DRAFT_1903 0.19 +0.5
1,910,000 + EX28DRAFT_1903 0.19 -0.3
1,910,001 - EX28DRAFT_1903 0.19 -1.7
1,910,001 - EX28DRAFT_1903 0.19 +0.9
1,910,002 + EX28DRAFT_1903 0.20 -0.3
1,910,002 + EX28DRAFT_1903 0.20 +0.3
1,910,023 + EX28DRAFT_1903 0.21 -0.3
1,910,024 - EX28DRAFT_1903 0.21 -0.6
1,910,024 - EX28DRAFT_1903 0.21 +0.3
1,910,096 + EX28DRAFT_1903 0.26 -0.3
1,910,096 + EX28DRAFT_1903 0.26 +2.8
1,910,096 + EX28DRAFT_1903 0.26 -0.2
1,910,096 + EX28DRAFT_1903 0.26 -0.1
1,910,097 - EX28DRAFT_1903 0.26 -0.3
1,910,097 - EX28DRAFT_1903 0.26 -0.1
1,910,097 - EX28DRAFT_1903 0.26 -0.0
1,910,099 + EX28DRAFT_1903 0.26 +0.3
1,910,099 + EX28DRAFT_1903 0.26 +0.2
1,910,100 - EX28DRAFT_1903 0.26 -0.4
1,910,100 - EX28DRAFT_1903 0.26 -2.4
1,910,100 - EX28DRAFT_1903 0.26 +0.2
1,910,109 + EX28DRAFT_1903 0.27 +0.3
1,910,154 - EX28DRAFT_1903 0.30 -1.2
1,910,154 - EX28DRAFT_1903 0.30 +0.6
1,910,157 + EX28DRAFT_1903 0.30 +0.5
1,910,176 - EX28DRAFT_1903 0.31 +0.3
1,910,176 - EX28DRAFT_1903 0.31 +0.0
1,910,198 + EX28DRAFT_1903 0.33 +0.2
1,910,198 + EX28DRAFT_1903 0.33 -0.2
1,910,199 - EX28DRAFT_1903 0.33 +0.4
1,910,199 - EX28DRAFT_1903 0.33 +0.6

Or see this region's nucleotide sequence