Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1571 and EX28DRAFT_1572 are separated by 2 nucleotides EX28DRAFT_1572 and EX28DRAFT_1573 are separated by 11 nucleotides EX28DRAFT_1573 and EX28DRAFT_1574 are separated by 80 nucleotides
EX28DRAFT_1571: EX28DRAFT_1571 - Bacterial Ig-like domain (group 1), at 1,585,832 to 1,586,110
_1571
EX28DRAFT_1572: EX28DRAFT_1572 - hypothetical protein, at 1,586,113 to 1,587,066
_1572
EX28DRAFT_1573: EX28DRAFT_1573 - hypothetical protein, at 1,587,078 to 1,587,848
_1573
EX28DRAFT_1574: EX28DRAFT_1574 - Phage Mu protein F like protein, at 1,587,929 to 1,589,026
_1574
Position (kb) 1587
1588 Strain fitness (log2 ratio) -1
0
1
2 at 1586.139 kb on + strand at 1586.324 kb on + strand, within EX28DRAFT_1572 at 1586.325 kb on - strand, within EX28DRAFT_1572 at 1586.517 kb on - strand, within EX28DRAFT_1572 at 1586.517 kb on - strand, within EX28DRAFT_1572 at 1586.684 kb on + strand, within EX28DRAFT_1572 at 1586.722 kb on + strand, within EX28DRAFT_1572 at 1586.793 kb on - strand, within EX28DRAFT_1572 at 1586.900 kb on + strand, within EX28DRAFT_1572 at 1586.900 kb on + strand, within EX28DRAFT_1572 at 1586.900 kb on + strand, within EX28DRAFT_1572 at 1587.033 kb on - strand at 1587.051 kb on + strand at 1587.051 kb on + strand at 1587.051 kb on + strand at 1587.052 kb on - strand at 1587.060 kb on + strand at 1587.060 kb on + strand at 1587.060 kb on + strand at 1587.072 kb on - strand at 1587.124 kb on + strand at 1587.125 kb on - strand at 1587.678 kb on - strand, within EX28DRAFT_1573 at 1587.917 kb on - strand at 1587.917 kb on - strand at 1588.000 kb on - strand at 1588.108 kb on + strand, within EX28DRAFT_1574 at 1588.108 kb on + strand, within EX28DRAFT_1574 at 1588.109 kb on - strand, within EX28DRAFT_1574 at 1588.162 kb on + strand, within EX28DRAFT_1574 at 1588.162 kb on + strand, within EX28DRAFT_1574 at 1588.248 kb on + strand, within EX28DRAFT_1574 at 1588.249 kb on - strand, within EX28DRAFT_1574 at 1588.258 kb on + strand, within EX28DRAFT_1574 at 1588.288 kb on - strand, within EX28DRAFT_1574 at 1588.307 kb on - strand, within EX28DRAFT_1574 at 1588.327 kb on + strand, within EX28DRAFT_1574 at 1588.339 kb on + strand, within EX28DRAFT_1574 at 1588.543 kb on - strand, within EX28DRAFT_1574 at 1588.650 kb on + strand, within EX28DRAFT_1574 at 1588.666 kb on + strand, within EX28DRAFT_1574 at 1588.667 kb on - strand, within EX28DRAFT_1574 at 1588.669 kb on + strand, within EX28DRAFT_1574 at 1588.735 kb on - strand, within EX28DRAFT_1574 at 1588.735 kb on - strand, within EX28DRAFT_1574 at 1588.810 kb on + strand, within EX28DRAFT_1574 at 1588.811 kb on - strand, within EX28DRAFT_1574
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,586,139 + -0.2 1,586,324 + EX28DRAFT_1572 0.22 -1.2 1,586,325 - EX28DRAFT_1572 0.22 -1.4 1,586,517 - EX28DRAFT_1572 0.42 -0.1 1,586,517 - EX28DRAFT_1572 0.42 +0.3 1,586,684 + EX28DRAFT_1572 0.60 +0.2 1,586,722 + EX28DRAFT_1572 0.64 -0.6 1,586,793 - EX28DRAFT_1572 0.71 -1.1 1,586,900 + EX28DRAFT_1572 0.82 +0.2 1,586,900 + EX28DRAFT_1572 0.82 +0.4 1,586,900 + EX28DRAFT_1572 0.82 -0.9 1,587,033 - +0.4 1,587,051 + -0.3 1,587,051 + -0.6 1,587,051 + -0.2 1,587,052 - -0.7 1,587,060 + -0.2 1,587,060 + +0.6 1,587,060 + +0.1 1,587,072 - +0.6 1,587,124 + -0.6 1,587,125 - +0.0 1,587,678 - EX28DRAFT_1573 0.78 -1.2 1,587,917 - -0.2 1,587,917 - +0.1 1,588,000 - +0.2 1,588,108 + EX28DRAFT_1574 0.16 +0.2 1,588,108 + EX28DRAFT_1574 0.16 +0.3 1,588,109 - EX28DRAFT_1574 0.16 -0.6 1,588,162 + EX28DRAFT_1574 0.21 +0.0 1,588,162 + EX28DRAFT_1574 0.21 -0.5 1,588,248 + EX28DRAFT_1574 0.29 -0.9 1,588,249 - EX28DRAFT_1574 0.29 -0.2 1,588,258 + EX28DRAFT_1574 0.30 -1.0 1,588,288 - EX28DRAFT_1574 0.33 +0.3 1,588,307 - EX28DRAFT_1574 0.34 +0.4 1,588,327 + EX28DRAFT_1574 0.36 +2.4 1,588,339 + EX28DRAFT_1574 0.37 -0.5 1,588,543 - EX28DRAFT_1574 0.56 +0.5 1,588,650 + EX28DRAFT_1574 0.66 -0.3 1,588,666 + EX28DRAFT_1574 0.67 +0.0 1,588,667 - EX28DRAFT_1574 0.67 +0.0 1,588,669 + EX28DRAFT_1574 0.67 -0.2 1,588,735 - EX28DRAFT_1574 0.73 -0.9 1,588,735 - EX28DRAFT_1574 0.73 +0.3 1,588,810 + EX28DRAFT_1574 0.80 +0.3 1,588,811 - EX28DRAFT_1574 0.80 -0.3
Or see this region's nucleotide sequence