Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1409 and EX28DRAFT_1410 are separated by 143 nucleotides EX28DRAFT_1410 and EX28DRAFT_1411 are separated by 27 nucleotides
EX28DRAFT_1409: EX28DRAFT_1409 - transcriptional regulator, PaaX family, at 1,417,287 to 1,418,213
_1409
EX28DRAFT_1410: EX28DRAFT_1410 - phenylacetate-CoA ligase (EC 6.2.1.30), at 1,418,357 to 1,419,673
_1410
EX28DRAFT_1411: EX28DRAFT_1411 - 3-oxoadipyl-CoA thiolase, at 1,419,701 to 1,420,906
_1411
Position (kb) 1418
1419
1420 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1417.408 kb on + strand, within EX28DRAFT_1409 at 1417.409 kb on - strand, within EX28DRAFT_1409 at 1417.415 kb on + strand, within EX28DRAFT_1409 at 1417.618 kb on + strand, within EX28DRAFT_1409 at 1417.619 kb on - strand, within EX28DRAFT_1409 at 1418.135 kb on - strand at 1418.147 kb on + strand at 1418.231 kb on + strand at 1418.259 kb on - strand at 1418.473 kb on + strand at 1418.473 kb on + strand at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.962 kb on - strand, within EX28DRAFT_1410 at 1418.965 kb on + strand, within EX28DRAFT_1410 at 1419.136 kb on + strand, within EX28DRAFT_1410 at 1419.136 kb on + strand, within EX28DRAFT_1410 at 1419.137 kb on - strand, within EX28DRAFT_1410 at 1419.267 kb on + strand, within EX28DRAFT_1410 at 1419.407 kb on - strand, within EX28DRAFT_1410 at 1419.451 kb on - strand, within EX28DRAFT_1410 at 1419.454 kb on + strand, within EX28DRAFT_1410 at 1419.454 kb on + strand, within EX28DRAFT_1410 at 1419.454 kb on + strand, within EX28DRAFT_1410 at 1419.556 kb on - strand at 1419.556 kb on - strand at 1419.574 kb on - strand at 1419.621 kb on - strand at 1419.664 kb on + strand at 1419.664 kb on + strand at 1419.665 kb on - strand at 1419.676 kb on + strand at 1419.676 kb on + strand at 1419.754 kb on + strand at 1419.754 kb on + strand at 1419.755 kb on - strand at 1419.968 kb on - strand, within EX28DRAFT_1411 at 1419.968 kb on - strand, within EX28DRAFT_1411 at 1420.079 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.421 kb on - strand, within EX28DRAFT_1411
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,417,408 + EX28DRAFT_1409 0.13 -0.9 1,417,409 - EX28DRAFT_1409 0.13 +0.9 1,417,415 + EX28DRAFT_1409 0.14 +0.2 1,417,618 + EX28DRAFT_1409 0.36 +0.3 1,417,619 - EX28DRAFT_1409 0.36 +0.1 1,418,135 - +0.9 1,418,147 + -0.9 1,418,231 + -0.9 1,418,259 - -1.7 1,418,473 + -0.5 1,418,473 + -0.9 1,418,961 + EX28DRAFT_1410 0.46 -0.9 1,418,961 + EX28DRAFT_1410 0.46 -2.4 1,418,961 + EX28DRAFT_1410 0.46 -0.3 1,418,961 + EX28DRAFT_1410 0.46 -1.1 1,418,961 + EX28DRAFT_1410 0.46 -0.1 1,418,962 - EX28DRAFT_1410 0.46 -1.0 1,418,965 + EX28DRAFT_1410 0.46 +0.4 1,419,136 + EX28DRAFT_1410 0.59 -4.1 1,419,136 + EX28DRAFT_1410 0.59 +0.2 1,419,137 - EX28DRAFT_1410 0.59 -0.3 1,419,267 + EX28DRAFT_1410 0.69 +0.1 1,419,407 - EX28DRAFT_1410 0.80 +0.2 1,419,451 - EX28DRAFT_1410 0.83 -0.2 1,419,454 + EX28DRAFT_1410 0.83 -1.0 1,419,454 + EX28DRAFT_1410 0.83 +0.1 1,419,454 + EX28DRAFT_1410 0.83 +0.3 1,419,556 - -1.0 1,419,556 - -0.0 1,419,574 - +0.1 1,419,621 - +0.2 1,419,664 + +0.2 1,419,664 + -0.0 1,419,665 - +0.1 1,419,676 + -1.7 1,419,676 + +0.5 1,419,754 + +4.4 1,419,754 + -2.1 1,419,755 - -0.2 1,419,968 - EX28DRAFT_1411 0.22 -0.6 1,419,968 - EX28DRAFT_1411 0.22 -0.6 1,420,079 + EX28DRAFT_1411 0.31 +0.0 1,420,420 + EX28DRAFT_1411 0.60 -1.5 1,420,420 + EX28DRAFT_1411 0.60 -0.1 1,420,420 + EX28DRAFT_1411 0.60 -0.4 1,420,421 - EX28DRAFT_1411 0.60 +0.9
Or see this region's nucleotide sequence