Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1382

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1380 and EX28DRAFT_1381 are separated by 54 nucleotidesEX28DRAFT_1381 and EX28DRAFT_1382 are separated by 51 nucleotidesEX28DRAFT_1382 and EX28DRAFT_1383 are separated by 103 nucleotidesEX28DRAFT_1383 and EX28DRAFT_1384 are separated by 39 nucleotides EX28DRAFT_1380: EX28DRAFT_1380 - transcriptional regulator, HxlR family, at 1,393,237 to 1,393,611 _1380 EX28DRAFT_1381: EX28DRAFT_1381 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,393,666 to 1,394,445 _1381 EX28DRAFT_1382: EX28DRAFT_1382 - transcriptional regulator, TetR family, at 1,394,497 to 1,395,075 _1382 EX28DRAFT_1383: EX28DRAFT_1383 - Uncharacterized protein conserved in bacteria, at 1,395,179 to 1,395,646 _1383 EX28DRAFT_1384: EX28DRAFT_1384 - Predicted ester cyclase, at 1,395,686 to 1,396,225 _1384 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -2 -1 0 1 2at 1393.561 kb on - strand, within EX28DRAFT_1380at 1393.563 kb on - strand, within EX28DRAFT_1380at 1393.632 kb on - strandat 1393.802 kb on + strand, within EX28DRAFT_1381at 1393.989 kb on - strand, within EX28DRAFT_1381at 1394.007 kb on - strand, within EX28DRAFT_1381at 1394.013 kb on - strand, within EX28DRAFT_1381at 1394.061 kb on + strand, within EX28DRAFT_1381at 1394.147 kb on - strand, within EX28DRAFT_1381at 1394.147 kb on - strand, within EX28DRAFT_1381at 1394.152 kb on - strand, within EX28DRAFT_1381at 1394.275 kb on + strand, within EX28DRAFT_1381at 1394.276 kb on - strand, within EX28DRAFT_1381at 1394.578 kb on - strand, within EX28DRAFT_1382at 1394.837 kb on - strand, within EX28DRAFT_1382at 1395.027 kb on + strandat 1395.049 kb on - strandat 1395.123 kb on + strandat 1395.158 kb on + strandat 1395.161 kb on - strandat 1395.450 kb on - strand, within EX28DRAFT_1383at 1395.556 kb on + strand, within EX28DRAFT_1383at 1395.644 kb on + strandat 1395.839 kb on - strand, within EX28DRAFT_1384at 1395.947 kb on - strand, within EX28DRAFT_1384

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,393,561 - EX28DRAFT_1380 0.86 +0.0
1,393,563 - EX28DRAFT_1380 0.87 +0.2
1,393,632 - -0.0
1,393,802 + EX28DRAFT_1381 0.17 +0.5
1,393,989 - EX28DRAFT_1381 0.41 +0.0
1,394,007 - EX28DRAFT_1381 0.44 -0.0
1,394,013 - EX28DRAFT_1381 0.44 +0.4
1,394,061 + EX28DRAFT_1381 0.51 -0.0
1,394,147 - EX28DRAFT_1381 0.62 +0.2
1,394,147 - EX28DRAFT_1381 0.62 -0.3
1,394,152 - EX28DRAFT_1381 0.62 -2.0
1,394,275 + EX28DRAFT_1381 0.78 -0.4
1,394,276 - EX28DRAFT_1381 0.78 -2.2
1,394,578 - EX28DRAFT_1382 0.14 -2.5
1,394,837 - EX28DRAFT_1382 0.59 -1.3
1,395,027 + -0.7
1,395,049 - +0.4
1,395,123 + +0.0
1,395,158 + -0.1
1,395,161 - +1.8
1,395,450 - EX28DRAFT_1383 0.58 -0.3
1,395,556 + EX28DRAFT_1383 0.81 +1.7
1,395,644 + -0.6
1,395,839 - EX28DRAFT_1384 0.28 +0.4
1,395,947 - EX28DRAFT_1384 0.48 +0.1

Or see this region's nucleotide sequence