Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1368

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1365 and EX28DRAFT_1366 are separated by 95 nucleotidesEX28DRAFT_1366 and EX28DRAFT_1367 are separated by 4 nucleotidesEX28DRAFT_1367 and EX28DRAFT_1368 overlap by 4 nucleotidesEX28DRAFT_1368 and EX28DRAFT_1369 overlap by 4 nucleotidesEX28DRAFT_1369 and EX28DRAFT_1370 overlap by 4 nucleotidesEX28DRAFT_1370 and EX28DRAFT_1371 overlap by 4 nucleotides EX28DRAFT_1365: EX28DRAFT_1365 - Transcriptional regulator, at 1,383,209 to 1,384,141 _1365 EX28DRAFT_1366: EX28DRAFT_1366 - Uncharacterized protein conserved in bacteria, at 1,384,237 to 1,384,671 _1366 EX28DRAFT_1367: EX28DRAFT_1367 - Uncharacterized protein conserved in bacteria, at 1,384,676 to 1,385,134 _1367 EX28DRAFT_1368: EX28DRAFT_1368 - Protein of unknown function (DUF3833), at 1,385,131 to 1,385,664 _1368 EX28DRAFT_1369: EX28DRAFT_1369 - hypothetical protein, at 1,385,661 to 1,386,182 _1369 EX28DRAFT_1370: EX28DRAFT_1370 - Protein of unknown function (DUF2878), at 1,386,179 to 1,386,664 _1370 EX28DRAFT_1371: EX28DRAFT_1371 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,386,661 to 1,387,881 _1371 Position (kb) 1385 1386Strain fitness (log2 ratio) -1 0 1 2at 1384.204 kb on + strandat 1384.471 kb on + strand, within EX28DRAFT_1366at 1384.617 kb on + strand, within EX28DRAFT_1366at 1384.618 kb on - strand, within EX28DRAFT_1366at 1384.636 kb on - strandat 1384.676 kb on - strandat 1384.686 kb on + strandat 1384.687 kb on - strandat 1384.843 kb on + strand, within EX28DRAFT_1367at 1385.090 kb on + strandat 1385.091 kb on - strandat 1385.099 kb on + strandat 1385.100 kb on - strandat 1385.235 kb on - strand, within EX28DRAFT_1368at 1385.294 kb on + strand, within EX28DRAFT_1368at 1385.367 kb on - strand, within EX28DRAFT_1368at 1385.389 kb on + strand, within EX28DRAFT_1368at 1385.390 kb on - strand, within EX28DRAFT_1368at 1385.390 kb on - strand, within EX28DRAFT_1368at 1385.391 kb on + strand, within EX28DRAFT_1368at 1385.610 kb on + strand, within EX28DRAFT_1368at 1385.778 kb on - strand, within EX28DRAFT_1369at 1385.992 kb on + strand, within EX28DRAFT_1369at 1385.992 kb on + strand, within EX28DRAFT_1369at 1385.993 kb on - strand, within EX28DRAFT_1369at 1385.997 kb on - strand, within EX28DRAFT_1369at 1385.997 kb on - strand, within EX28DRAFT_1369at 1386.000 kb on - strand, within EX28DRAFT_1369at 1386.000 kb on - strand, within EX28DRAFT_1369at 1386.048 kb on + strand, within EX28DRAFT_1369at 1386.059 kb on + strand, within EX28DRAFT_1369at 1386.059 kb on + strand, within EX28DRAFT_1369at 1386.059 kb on + strand, within EX28DRAFT_1369at 1386.060 kb on - strand, within EX28DRAFT_1369at 1386.061 kb on + strand, within EX28DRAFT_1369at 1386.062 kb on - strand, within EX28DRAFT_1369at 1386.152 kb on + strandat 1386.306 kb on + strand, within EX28DRAFT_1370at 1386.616 kb on - strandat 1386.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,384,204 + +0.2
1,384,471 + EX28DRAFT_1366 0.54 -1.3
1,384,617 + EX28DRAFT_1366 0.87 +0.6
1,384,618 - EX28DRAFT_1366 0.88 -0.3
1,384,636 - +0.1
1,384,676 - -0.2
1,384,686 + +0.7
1,384,687 - +1.2
1,384,843 + EX28DRAFT_1367 0.36 +0.1
1,385,090 + -0.5
1,385,091 - -0.4
1,385,099 + +0.1
1,385,100 - -0.3
1,385,235 - EX28DRAFT_1368 0.19 +1.3
1,385,294 + EX28DRAFT_1368 0.31 +0.5
1,385,367 - EX28DRAFT_1368 0.44 +2.7
1,385,389 + EX28DRAFT_1368 0.48 -0.2
1,385,390 - EX28DRAFT_1368 0.49 +0.3
1,385,390 - EX28DRAFT_1368 0.49 +0.2
1,385,391 + EX28DRAFT_1368 0.49 +0.5
1,385,610 + EX28DRAFT_1368 0.90 +0.0
1,385,778 - EX28DRAFT_1369 0.22 -1.0
1,385,992 + EX28DRAFT_1369 0.63 +1.2
1,385,992 + EX28DRAFT_1369 0.63 -0.2
1,385,993 - EX28DRAFT_1369 0.64 -0.6
1,385,997 - EX28DRAFT_1369 0.64 -1.0
1,385,997 - EX28DRAFT_1369 0.64 -0.1
1,386,000 - EX28DRAFT_1369 0.65 +0.2
1,386,000 - EX28DRAFT_1369 0.65 -0.0
1,386,048 + EX28DRAFT_1369 0.74 +0.0
1,386,059 + EX28DRAFT_1369 0.76 +0.4
1,386,059 + EX28DRAFT_1369 0.76 +0.6
1,386,059 + EX28DRAFT_1369 0.76 +0.7
1,386,060 - EX28DRAFT_1369 0.76 +1.8
1,386,061 + EX28DRAFT_1369 0.77 +0.4
1,386,062 - EX28DRAFT_1369 0.77 +0.0
1,386,152 + -0.6
1,386,306 + EX28DRAFT_1370 0.26 +0.7
1,386,616 - -0.4
1,386,616 - -0.4

Or see this region's nucleotide sequence