Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1268

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1267 and EX28DRAFT_1268 overlap by 4 nucleotidesEX28DRAFT_1268 and EX28DRAFT_1269 overlap by 4 nucleotides EX28DRAFT_1267: EX28DRAFT_1267 - Predicted acyltransferases, at 1,283,551 to 1,284,624 _1267 EX28DRAFT_1268: EX28DRAFT_1268 - Lysophospholipase L1 and related esterases, at 1,284,621 to 1,285,736 _1268 EX28DRAFT_1269: EX28DRAFT_1269 - Head domain of trimeric autotransporter adhesin, at 1,285,733 to 1,287,241 _1269 Position (kb) 1284 1285 1286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1283.648 kb on + strandat 1283.701 kb on - strand, within EX28DRAFT_1267at 1283.710 kb on + strand, within EX28DRAFT_1267at 1283.731 kb on + strand, within EX28DRAFT_1267at 1283.731 kb on + strand, within EX28DRAFT_1267at 1283.732 kb on - strand, within EX28DRAFT_1267at 1283.733 kb on + strand, within EX28DRAFT_1267at 1283.742 kb on + strand, within EX28DRAFT_1267at 1283.742 kb on + strand, within EX28DRAFT_1267at 1283.806 kb on + strand, within EX28DRAFT_1267at 1283.806 kb on + strand, within EX28DRAFT_1267at 1283.806 kb on + strand, within EX28DRAFT_1267at 1283.807 kb on - strand, within EX28DRAFT_1267at 1283.807 kb on - strand, within EX28DRAFT_1267at 1283.807 kb on - strand, within EX28DRAFT_1267at 1283.838 kb on - strand, within EX28DRAFT_1267at 1283.838 kb on - strand, within EX28DRAFT_1267at 1283.862 kb on + strand, within EX28DRAFT_1267at 1283.862 kb on + strand, within EX28DRAFT_1267at 1283.863 kb on - strand, within EX28DRAFT_1267at 1283.863 kb on - strand, within EX28DRAFT_1267at 1283.863 kb on - strand, within EX28DRAFT_1267at 1283.891 kb on - strand, within EX28DRAFT_1267at 1283.891 kb on - strand, within EX28DRAFT_1267at 1283.891 kb on - strand, within EX28DRAFT_1267at 1284.129 kb on + strand, within EX28DRAFT_1267at 1284.184 kb on + strand, within EX28DRAFT_1267at 1284.184 kb on + strand, within EX28DRAFT_1267at 1284.184 kb on + strand, within EX28DRAFT_1267at 1284.184 kb on + strand, within EX28DRAFT_1267at 1284.185 kb on - strand, within EX28DRAFT_1267at 1284.244 kb on - strand, within EX28DRAFT_1267at 1284.246 kb on - strand, within EX28DRAFT_1267at 1284.295 kb on + strand, within EX28DRAFT_1267at 1284.296 kb on - strand, within EX28DRAFT_1267at 1284.318 kb on + strand, within EX28DRAFT_1267at 1284.376 kb on - strand, within EX28DRAFT_1267at 1284.511 kb on + strand, within EX28DRAFT_1267at 1284.512 kb on - strand, within EX28DRAFT_1267at 1284.516 kb on + strand, within EX28DRAFT_1267at 1284.631 kb on + strandat 1284.637 kb on + strandat 1284.638 kb on - strandat 1284.802 kb on - strand, within EX28DRAFT_1268at 1285.313 kb on + strand, within EX28DRAFT_1268at 1285.454 kb on + strand, within EX28DRAFT_1268at 1285.472 kb on - strand, within EX28DRAFT_1268at 1285.596 kb on - strand, within EX28DRAFT_1268at 1285.753 kb on + strandat 1285.810 kb on + strandat 1285.820 kb on - strandat 1285.826 kb on + strandat 1285.838 kb on - strandat 1285.874 kb on - strandat 1285.892 kb on + strand, within EX28DRAFT_1269at 1285.893 kb on - strand, within EX28DRAFT_1269at 1285.913 kb on - strand, within EX28DRAFT_1269at 1285.955 kb on - strand, within EX28DRAFT_1269at 1285.957 kb on + strand, within EX28DRAFT_1269at 1285.957 kb on + strand, within EX28DRAFT_1269at 1285.957 kb on + strand, within EX28DRAFT_1269at 1285.957 kb on + strand, within EX28DRAFT_1269at 1285.957 kb on + strand, within EX28DRAFT_1269at 1285.958 kb on - strand, within EX28DRAFT_1269at 1285.963 kb on + strand, within EX28DRAFT_1269at 1285.963 kb on + strand, within EX28DRAFT_1269at 1285.971 kb on - strand, within EX28DRAFT_1269at 1286.069 kb on + strand, within EX28DRAFT_1269at 1286.069 kb on + strand, within EX28DRAFT_1269at 1286.087 kb on - strand, within EX28DRAFT_1269at 1286.195 kb on - strand, within EX28DRAFT_1269at 1286.226 kb on + strand, within EX28DRAFT_1269at 1286.288 kb on + strand, within EX28DRAFT_1269at 1286.305 kb on + strand, within EX28DRAFT_1269at 1286.438 kb on + strand, within EX28DRAFT_1269at 1286.438 kb on + strand, within EX28DRAFT_1269at 1286.438 kb on + strand, within EX28DRAFT_1269at 1286.438 kb on + strand, within EX28DRAFT_1269at 1286.439 kb on - strand, within EX28DRAFT_1269at 1286.439 kb on - strand, within EX28DRAFT_1269at 1286.441 kb on - strand, within EX28DRAFT_1269at 1286.441 kb on - strand, within EX28DRAFT_1269at 1286.441 kb on - strand, within EX28DRAFT_1269at 1286.491 kb on + strand, within EX28DRAFT_1269at 1286.492 kb on - strand, within EX28DRAFT_1269at 1286.550 kb on + strand, within EX28DRAFT_1269at 1286.550 kb on + strand, within EX28DRAFT_1269at 1286.550 kb on + strand, within EX28DRAFT_1269at 1286.550 kb on + strand, within EX28DRAFT_1269at 1286.550 kb on + strand, within EX28DRAFT_1269at 1286.551 kb on - strand, within EX28DRAFT_1269at 1286.551 kb on - strand, within EX28DRAFT_1269at 1286.551 kb on - strand, within EX28DRAFT_1269at 1286.551 kb on - strand, within EX28DRAFT_1269at 1286.556 kb on - strand, within EX28DRAFT_1269at 1286.583 kb on + strand, within EX28DRAFT_1269at 1286.584 kb on - strand, within EX28DRAFT_1269at 1286.625 kb on + strand, within EX28DRAFT_1269at 1286.626 kb on - strand, within EX28DRAFT_1269at 1286.626 kb on - strand, within EX28DRAFT_1269

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,283,648 + +0.5
1,283,701 - EX28DRAFT_1267 0.14 -1.1
1,283,710 + EX28DRAFT_1267 0.15 +0.6
1,283,731 + EX28DRAFT_1267 0.17 +0.7
1,283,731 + EX28DRAFT_1267 0.17 -0.4
1,283,732 - EX28DRAFT_1267 0.17 -1.8
1,283,733 + EX28DRAFT_1267 0.17 -0.8
1,283,742 + EX28DRAFT_1267 0.18 +0.4
1,283,742 + EX28DRAFT_1267 0.18 +2.4
1,283,806 + EX28DRAFT_1267 0.24 +0.8
1,283,806 + EX28DRAFT_1267 0.24 -0.3
1,283,806 + EX28DRAFT_1267 0.24 -1.6
1,283,807 - EX28DRAFT_1267 0.24 -0.3
1,283,807 - EX28DRAFT_1267 0.24 -0.8
1,283,807 - EX28DRAFT_1267 0.24 -0.3
1,283,838 - EX28DRAFT_1267 0.27 -1.1
1,283,838 - EX28DRAFT_1267 0.27 +0.7
1,283,862 + EX28DRAFT_1267 0.29 -0.6
1,283,862 + EX28DRAFT_1267 0.29 -1.0
1,283,863 - EX28DRAFT_1267 0.29 -0.7
1,283,863 - EX28DRAFT_1267 0.29 -1.8
1,283,863 - EX28DRAFT_1267 0.29 -0.0
1,283,891 - EX28DRAFT_1267 0.32 +2.0
1,283,891 - EX28DRAFT_1267 0.32 -2.0
1,283,891 - EX28DRAFT_1267 0.32 -0.4
1,284,129 + EX28DRAFT_1267 0.54 +3.7
1,284,184 + EX28DRAFT_1267 0.59 +0.3
1,284,184 + EX28DRAFT_1267 0.59 +0.4
1,284,184 + EX28DRAFT_1267 0.59 -0.4
1,284,184 + EX28DRAFT_1267 0.59 +0.5
1,284,185 - EX28DRAFT_1267 0.59 -0.4
1,284,244 - EX28DRAFT_1267 0.65 +0.4
1,284,246 - EX28DRAFT_1267 0.65 -1.0
1,284,295 + EX28DRAFT_1267 0.69 -0.9
1,284,296 - EX28DRAFT_1267 0.69 -0.1
1,284,318 + EX28DRAFT_1267 0.71 -3.9
1,284,376 - EX28DRAFT_1267 0.77 -2.8
1,284,511 + EX28DRAFT_1267 0.89 +0.5
1,284,512 - EX28DRAFT_1267 0.89 +3.8
1,284,516 + EX28DRAFT_1267 0.90 -1.0
1,284,631 + -1.9
1,284,637 + -4.5
1,284,638 - -0.0
1,284,802 - EX28DRAFT_1268 0.16 -1.5
1,285,313 + EX28DRAFT_1268 0.62 +0.4
1,285,454 + EX28DRAFT_1268 0.75 +2.8
1,285,472 - EX28DRAFT_1268 0.76 -1.6
1,285,596 - EX28DRAFT_1268 0.87 -1.0
1,285,753 + +0.2
1,285,810 + +0.0
1,285,820 - +1.1
1,285,826 + +0.4
1,285,838 - -0.1
1,285,874 - +0.2
1,285,892 + EX28DRAFT_1269 0.11 -0.1
1,285,893 - EX28DRAFT_1269 0.11 +0.1
1,285,913 - EX28DRAFT_1269 0.12 -0.4
1,285,955 - EX28DRAFT_1269 0.15 -0.8
1,285,957 + EX28DRAFT_1269 0.15 -0.3
1,285,957 + EX28DRAFT_1269 0.15 -1.5
1,285,957 + EX28DRAFT_1269 0.15 +3.3
1,285,957 + EX28DRAFT_1269 0.15 -0.5
1,285,957 + EX28DRAFT_1269 0.15 -0.3
1,285,958 - EX28DRAFT_1269 0.15 -0.7
1,285,963 + EX28DRAFT_1269 0.15 -1.0
1,285,963 + EX28DRAFT_1269 0.15 -0.9
1,285,971 - EX28DRAFT_1269 0.16 -0.5
1,286,069 + EX28DRAFT_1269 0.22 +0.3
1,286,069 + EX28DRAFT_1269 0.22 +0.0
1,286,087 - EX28DRAFT_1269 0.23 -0.5
1,286,195 - EX28DRAFT_1269 0.31 -1.2
1,286,226 + EX28DRAFT_1269 0.33 -0.4
1,286,288 + EX28DRAFT_1269 0.37 +0.8
1,286,305 + EX28DRAFT_1269 0.38 +0.2
1,286,438 + EX28DRAFT_1269 0.47 -1.1
1,286,438 + EX28DRAFT_1269 0.47 +0.1
1,286,438 + EX28DRAFT_1269 0.47 -0.9
1,286,438 + EX28DRAFT_1269 0.47 +1.8
1,286,439 - EX28DRAFT_1269 0.47 +2.8
1,286,439 - EX28DRAFT_1269 0.47 +1.6
1,286,441 - EX28DRAFT_1269 0.47 -1.2
1,286,441 - EX28DRAFT_1269 0.47 -0.2
1,286,441 - EX28DRAFT_1269 0.47 +0.8
1,286,491 + EX28DRAFT_1269 0.50 +0.8
1,286,492 - EX28DRAFT_1269 0.50 +1.2
1,286,550 + EX28DRAFT_1269 0.54 -0.6
1,286,550 + EX28DRAFT_1269 0.54 -2.4
1,286,550 + EX28DRAFT_1269 0.54 -0.2
1,286,550 + EX28DRAFT_1269 0.54 -0.8
1,286,550 + EX28DRAFT_1269 0.54 -0.0
1,286,551 - EX28DRAFT_1269 0.54 +0.4
1,286,551 - EX28DRAFT_1269 0.54 -0.4
1,286,551 - EX28DRAFT_1269 0.54 -0.2
1,286,551 - EX28DRAFT_1269 0.54 -3.1
1,286,556 - EX28DRAFT_1269 0.55 -0.2
1,286,583 + EX28DRAFT_1269 0.56 +0.0
1,286,584 - EX28DRAFT_1269 0.56 -2.1
1,286,625 + EX28DRAFT_1269 0.59 -0.2
1,286,626 - EX28DRAFT_1269 0.59 +0.5
1,286,626 - EX28DRAFT_1269 0.59 -0.7

Or see this region's nucleotide sequence