Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1248 and EX28DRAFT_1249 are separated by 17 nucleotides EX28DRAFT_1249 and EX28DRAFT_1250 are separated by 11 nucleotides EX28DRAFT_1250 and EX28DRAFT_1251 are separated by 9 nucleotides EX28DRAFT_1251 and EX28DRAFT_1252 are separated by 132 nucleotides
EX28DRAFT_1248: EX28DRAFT_1248 - Short-chain dehydrogenases of various substrate specificities, at 1,265,872 to 1,266,852
_1248
EX28DRAFT_1249: EX28DRAFT_1249 - amidohydrolase, PncC family, at 1,266,870 to 1,267,388
_1249
EX28DRAFT_1250: EX28DRAFT_1250 - Protein of unknown function (DUF421), at 1,267,400 to 1,267,846
_1250
EX28DRAFT_1251: EX28DRAFT_1251 - hypothetical protein, at 1,267,856 to 1,268,365
_1251
EX28DRAFT_1252: EX28DRAFT_1252 - TIGR00156 family protein, at 1,268,498 to 1,268,887
_1252
Position (kb) 1267
1268 Strain fitness (log2 ratio) -2
-1
0
1 at 1266.483 kb on + strand, within EX28DRAFT_1248 at 1266.524 kb on + strand, within EX28DRAFT_1248 at 1266.561 kb on + strand, within EX28DRAFT_1248 at 1266.853 kb on - strand at 1266.853 kb on - strand at 1266.853 kb on - strand at 1266.865 kb on + strand at 1266.866 kb on - strand at 1266.866 kb on - strand at 1267.359 kb on - strand at 1267.456 kb on + strand, within EX28DRAFT_1250 at 1267.815 kb on + strand at 1267.820 kb on - strand at 1267.867 kb on + strand at 1267.990 kb on - strand, within EX28DRAFT_1251 at 1268.023 kb on + strand, within EX28DRAFT_1251 at 1268.024 kb on - strand, within EX28DRAFT_1251 at 1268.024 kb on - strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.166 kb on + strand, within EX28DRAFT_1251 at 1268.167 kb on - strand, within EX28DRAFT_1251 at 1268.171 kb on + strand, within EX28DRAFT_1251 at 1268.172 kb on - strand, within EX28DRAFT_1251 at 1268.272 kb on + strand, within EX28DRAFT_1251 at 1268.442 kb on + strand at 1268.466 kb on + strand at 1268.781 kb on + strand, within EX28DRAFT_1252
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,266,483 + EX28DRAFT_1248 0.62 -0.8 1,266,524 + EX28DRAFT_1248 0.66 -0.3 1,266,561 + EX28DRAFT_1248 0.70 -0.3 1,266,853 - +0.9 1,266,853 - +0.8 1,266,853 - +0.7 1,266,865 + -0.5 1,266,866 - +0.1 1,266,866 - -0.4 1,267,359 - +0.4 1,267,456 + EX28DRAFT_1250 0.13 -1.0 1,267,815 + -0.7 1,267,820 - -1.0 1,267,867 + +0.2 1,267,990 - EX28DRAFT_1251 0.26 -1.3 1,268,023 + EX28DRAFT_1251 0.33 +1.0 1,268,024 - EX28DRAFT_1251 0.33 -1.3 1,268,024 - EX28DRAFT_1251 0.33 -0.5 1,268,094 + EX28DRAFT_1251 0.47 -0.9 1,268,094 + EX28DRAFT_1251 0.47 +1.0 1,268,094 + EX28DRAFT_1251 0.47 +0.1 1,268,094 + EX28DRAFT_1251 0.47 +0.6 1,268,095 - EX28DRAFT_1251 0.47 -0.4 1,268,095 - EX28DRAFT_1251 0.47 +0.6 1,268,095 - EX28DRAFT_1251 0.47 -2.0 1,268,095 - EX28DRAFT_1251 0.47 +0.1 1,268,166 + EX28DRAFT_1251 0.61 -1.4 1,268,167 - EX28DRAFT_1251 0.61 -0.1 1,268,171 + EX28DRAFT_1251 0.62 +0.1 1,268,172 - EX28DRAFT_1251 0.62 -0.5 1,268,272 + EX28DRAFT_1251 0.82 +0.2 1,268,442 + -0.7 1,268,466 + -0.4 1,268,781 + EX28DRAFT_1252 0.73 -0.3
Or see this region's nucleotide sequence