Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0936 and EX28DRAFT_0937 are separated by 23 nucleotides EX28DRAFT_0937 and EX28DRAFT_0938 are separated by 148 nucleotides EX28DRAFT_0938 and EX28DRAFT_0939 overlap by 4 nucleotides EX28DRAFT_0939 and EX28DRAFT_0940 are separated by 96 nucleotides
EX28DRAFT_0936: EX28DRAFT_0936 - anthranilate synthase, component I (EC 4.1.3.27), at 935,652 to 937,214
_0936
EX28DRAFT_0937: EX28DRAFT_0937 - RNA, at 937,238 to 937,331
_0937
EX28DRAFT_0938: EX28DRAFT_0938 - Predicted metal-dependent phosphoesterases (PHP family), at 937,480 to 938,373
_0938
EX28DRAFT_0939: EX28DRAFT_0939 - tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family, at 938,370 to 938,990
_0939
EX28DRAFT_0940: EX28DRAFT_0940 - pseudouridine synthase, at 939,087 to 939,962
_0940
Position (kb) 937
938
939 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 936.689 kb on - strand, within EX28DRAFT_0936 at 936.689 kb on - strand, within EX28DRAFT_0936 at 936.698 kb on - strand, within EX28DRAFT_0936 at 936.761 kb on - strand, within EX28DRAFT_0936 at 936.911 kb on + strand, within EX28DRAFT_0936 at 936.911 kb on + strand, within EX28DRAFT_0936 at 937.360 kb on + strand at 937.386 kb on + strand at 937.391 kb on - strand at 937.395 kb on - strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.516 kb on - strand at 937.527 kb on - strand at 937.527 kb on - strand at 937.537 kb on - strand at 937.537 kb on - strand at 937.763 kb on + strand, within EX28DRAFT_0938 at 937.779 kb on + strand, within EX28DRAFT_0938 at 937.780 kb on - strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 938.006 kb on - strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.095 kb on + strand, within EX28DRAFT_0938 at 938.097 kb on + strand, within EX28DRAFT_0938 at 938.098 kb on - strand, within EX28DRAFT_0938 at 938.369 kb on + strand at 938.370 kb on - strand at 938.370 kb on - strand at 938.507 kb on + strand, within EX28DRAFT_0939 at 938.558 kb on + strand, within EX28DRAFT_0939 at 938.601 kb on + strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.607 kb on + strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.690 kb on - strand, within EX28DRAFT_0939 at 938.975 kb on - strand at 938.975 kb on - strand at 938.996 kb on + strand at 938.996 kb on + strand at 938.997 kb on - strand at 939.004 kb on + strand at 939.005 kb on - strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.300 kb on + strand, within EX28DRAFT_0940 at 939.304 kb on - strand, within EX28DRAFT_0940
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 936,689 - EX28DRAFT_0936 0.66 -1.8 936,689 - EX28DRAFT_0936 0.66 -2.2 936,698 - EX28DRAFT_0936 0.67 -0.4 936,761 - EX28DRAFT_0936 0.71 -0.5 936,911 + EX28DRAFT_0936 0.81 -0.3 936,911 + EX28DRAFT_0936 0.81 -0.4 937,360 + +0.2 937,386 + -1.2 937,391 - +0.7 937,395 - +0.1 937,507 + -0.8 937,507 + +0.5 937,507 + -0.6 937,516 - +2.0 937,527 - -0.5 937,527 - +0.5 937,537 - +0.5 937,537 - -0.7 937,763 + EX28DRAFT_0938 0.32 +1.2 937,779 + EX28DRAFT_0938 0.33 +1.4 937,780 - EX28DRAFT_0938 0.34 +1.1 937,981 + EX28DRAFT_0938 0.56 +0.2 937,981 + EX28DRAFT_0938 0.56 -0.5 938,006 - EX28DRAFT_0938 0.59 +3.2 938,040 + EX28DRAFT_0938 0.63 +0.3 938,040 + EX28DRAFT_0938 0.63 -0.2 938,041 - EX28DRAFT_0938 0.63 +0.2 938,041 - EX28DRAFT_0938 0.63 -2.4 938,095 + EX28DRAFT_0938 0.69 -0.0 938,097 + EX28DRAFT_0938 0.69 +0.8 938,098 - EX28DRAFT_0938 0.69 -0.2 938,369 + -0.7 938,370 - -0.6 938,370 - +0.7 938,507 + EX28DRAFT_0939 0.22 +0.5 938,558 + EX28DRAFT_0939 0.30 -0.7 938,601 + EX28DRAFT_0939 0.37 +1.3 938,602 - EX28DRAFT_0939 0.37 -0.6 938,602 - EX28DRAFT_0939 0.37 -0.3 938,602 - EX28DRAFT_0939 0.37 -0.6 938,607 + EX28DRAFT_0939 0.38 -0.8 938,608 - EX28DRAFT_0939 0.38 -1.3 938,608 - EX28DRAFT_0939 0.38 -0.0 938,608 - EX28DRAFT_0939 0.38 +1.5 938,608 - EX28DRAFT_0939 0.38 -0.6 938,608 - EX28DRAFT_0939 0.38 -0.8 938,658 + EX28DRAFT_0939 0.46 -1.7 938,658 + EX28DRAFT_0939 0.46 -2.2 938,658 + EX28DRAFT_0939 0.46 -0.7 938,659 - EX28DRAFT_0939 0.47 +0.6 938,659 - EX28DRAFT_0939 0.47 -1.5 938,659 - EX28DRAFT_0939 0.47 -0.4 938,690 - EX28DRAFT_0939 0.52 -0.6 938,975 - +0.2 938,975 - -0.7 938,996 + -1.0 938,996 + +0.2 938,997 - -5.1 939,004 + +0.7 939,005 - -0.7 939,006 + -0.1 939,006 + +1.5 939,006 + +0.0 939,300 + EX28DRAFT_0940 0.24 +0.2 939,304 - EX28DRAFT_0940 0.25 +0.2
Or see this region's nucleotide sequence