Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0917

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0915 and EX28DRAFT_0916 are separated by 12 nucleotidesEX28DRAFT_0916 and EX28DRAFT_0917 overlap by 4 nucleotidesEX28DRAFT_0917 and EX28DRAFT_0918 are separated by 76 nucleotidesEX28DRAFT_0918 and EX28DRAFT_0919 are separated by 162 nucleotides EX28DRAFT_0915: EX28DRAFT_0915 - phage tail tape measure protein, TP901 family, core region, at 916,095 to 918,542 _0915 EX28DRAFT_0916: EX28DRAFT_0916 - Phage protein U, at 918,555 to 919,019 _0916 EX28DRAFT_0917: EX28DRAFT_0917 - Phage protein D, at 919,016 to 920,185 _0917 EX28DRAFT_0918: EX28DRAFT_0918 - Ogr/Delta-like zinc finger, at 920,262 to 920,483 _0918 EX28DRAFT_0919: EX28DRAFT_0919 - hypothetical protein, at 920,646 to 921,272 _0919 Position (kb) 919 920 921Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 918.155 kb on + strand, within EX28DRAFT_0915at 918.156 kb on - strand, within EX28DRAFT_0915at 918.161 kb on - strand, within EX28DRAFT_0915at 918.200 kb on + strand, within EX28DRAFT_0915at 918.321 kb on + strandat 918.321 kb on + strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.323 kb on + strandat 918.342 kb on + strandat 918.343 kb on - strandat 918.387 kb on - strandat 918.393 kb on + strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.397 kb on + strandat 918.417 kb on + strandat 918.417 kb on + strandat 918.419 kb on + strandat 918.419 kb on + strandat 918.420 kb on - strandat 918.527 kb on + strandat 918.559 kb on + strandat 918.612 kb on - strand, within EX28DRAFT_0916at 918.679 kb on - strand, within EX28DRAFT_0916at 918.827 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.946 kb on - strand, within EX28DRAFT_0916at 919.197 kb on + strand, within EX28DRAFT_0917at 919.197 kb on + strand, within EX28DRAFT_0917at 919.312 kb on + strand, within EX28DRAFT_0917at 919.351 kb on + strand, within EX28DRAFT_0917at 919.430 kb on - strand, within EX28DRAFT_0917at 919.685 kb on + strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.759 kb on + strand, within EX28DRAFT_0917at 919.760 kb on - strand, within EX28DRAFT_0917at 919.825 kb on + strand, within EX28DRAFT_0917at 919.907 kb on + strand, within EX28DRAFT_0917at 919.908 kb on - strand, within EX28DRAFT_0917at 920.014 kb on - strand, within EX28DRAFT_0917at 920.059 kb on - strand, within EX28DRAFT_0917at 920.059 kb on - strand, within EX28DRAFT_0917at 920.114 kb on + strandat 920.381 kb on - strand, within EX28DRAFT_0918at 920.395 kb on + strand, within EX28DRAFT_0918at 920.488 kb on + strandat 920.489 kb on - strandat 920.489 kb on - strandat 920.565 kb on + strandat 920.573 kb on - strandat 920.672 kb on - strandat 920.673 kb on + strandat 920.741 kb on + strand, within EX28DRAFT_0919at 920.945 kb on + strand, within EX28DRAFT_0919at 920.964 kb on + strand, within EX28DRAFT_0919at 920.965 kb on - strand, within EX28DRAFT_0919at 920.965 kb on - strand, within EX28DRAFT_0919at 920.997 kb on - strand, within EX28DRAFT_0919at 921.010 kb on - strand, within EX28DRAFT_0919at 921.064 kb on + strand, within EX28DRAFT_0919at 921.086 kb on + strand, within EX28DRAFT_0919at 921.104 kb on + strand, within EX28DRAFT_0919at 921.129 kb on - strand, within EX28DRAFT_0919at 921.129 kb on - strand, within EX28DRAFT_0919at 921.151 kb on + strand, within EX28DRAFT_0919at 921.151 kb on + strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.166 kb on + strand, within EX28DRAFT_0919

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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918,155 + EX28DRAFT_0915 0.84 +0.3
918,156 - EX28DRAFT_0915 0.84 -0.7
918,161 - EX28DRAFT_0915 0.84 -0.4
918,200 + EX28DRAFT_0915 0.86 -0.0
918,321 + +0.8
918,321 + +0.3
918,322 - -0.8
918,322 - +1.1
918,322 - +0.5
918,322 - -0.6
918,323 + -0.7
918,342 + +0.8
918,343 - -0.2
918,387 - +1.5
918,393 + +0.9
918,394 - -0.0
918,394 - +0.2
918,394 - -1.9
918,394 - +0.0
918,394 - +0.5
918,397 + +0.4
918,417 + -0.0
918,417 + +0.5
918,419 + +0.8
918,419 + +3.7
918,420 - -0.1
918,527 + -0.9
918,559 + -1.5
918,612 - EX28DRAFT_0916 0.12 -0.3
918,679 - EX28DRAFT_0916 0.27 -0.1
918,827 + EX28DRAFT_0916 0.58 +1.0
918,831 + EX28DRAFT_0916 0.59 +0.2
918,831 + EX28DRAFT_0916 0.59 -0.5
918,831 + EX28DRAFT_0916 0.59 -0.2
918,831 + EX28DRAFT_0916 0.59 +1.3
918,831 + EX28DRAFT_0916 0.59 +0.2
918,831 + EX28DRAFT_0916 0.59 +0.3
918,831 + EX28DRAFT_0916 0.59 +0.9
918,831 + EX28DRAFT_0916 0.59 +0.2
918,831 + EX28DRAFT_0916 0.59 +0.3
918,831 + EX28DRAFT_0916 0.59 +0.1
918,831 + EX28DRAFT_0916 0.59 +0.2
918,832 - EX28DRAFT_0916 0.60 -1.6
918,832 - EX28DRAFT_0916 0.60 +0.1
918,832 - EX28DRAFT_0916 0.60 -0.5
918,832 - EX28DRAFT_0916 0.60 +0.2
918,832 - EX28DRAFT_0916 0.60 +0.6
918,832 - EX28DRAFT_0916 0.60 -0.7
918,946 - EX28DRAFT_0916 0.84 +0.2
919,197 + EX28DRAFT_0917 0.15 -1.1
919,197 + EX28DRAFT_0917 0.15 -0.1
919,312 + EX28DRAFT_0917 0.25 -0.2
919,351 + EX28DRAFT_0917 0.29 -0.4
919,430 - EX28DRAFT_0917 0.35 -4.2
919,685 + EX28DRAFT_0917 0.57 -2.1
919,686 - EX28DRAFT_0917 0.57 -0.3
919,686 - EX28DRAFT_0917 0.57 +0.7
919,686 - EX28DRAFT_0917 0.57 +0.6
919,759 + EX28DRAFT_0917 0.64 +0.1
919,760 - EX28DRAFT_0917 0.64 -0.5
919,825 + EX28DRAFT_0917 0.69 +1.0
919,907 + EX28DRAFT_0917 0.76 -0.5
919,908 - EX28DRAFT_0917 0.76 +1.6
920,014 - EX28DRAFT_0917 0.85 +0.4
920,059 - EX28DRAFT_0917 0.89 +0.3
920,059 - EX28DRAFT_0917 0.89 -0.6
920,114 + +0.1
920,381 - EX28DRAFT_0918 0.54 -0.1
920,395 + EX28DRAFT_0918 0.60 -1.2
920,488 + +0.1
920,489 - -1.7
920,489 - -0.0
920,565 + -2.4
920,573 - +0.1
920,672 - +0.1
920,673 + -0.0
920,741 + EX28DRAFT_0919 0.15 +0.1
920,945 + EX28DRAFT_0919 0.48 +2.2
920,964 + EX28DRAFT_0919 0.51 +0.2
920,965 - EX28DRAFT_0919 0.51 -1.6
920,965 - EX28DRAFT_0919 0.51 -0.2
920,997 - EX28DRAFT_0919 0.56 -0.3
921,010 - EX28DRAFT_0919 0.58 -0.9
921,064 + EX28DRAFT_0919 0.67 +0.1
921,086 + EX28DRAFT_0919 0.70 +0.6
921,104 + EX28DRAFT_0919 0.73 +0.8
921,129 - EX28DRAFT_0919 0.77 -0.3
921,129 - EX28DRAFT_0919 0.77 -2.6
921,151 + EX28DRAFT_0919 0.81 -0.3
921,151 + EX28DRAFT_0919 0.81 +0.3
921,152 - EX28DRAFT_0919 0.81 -1.5
921,152 - EX28DRAFT_0919 0.81 +4.2
921,152 - EX28DRAFT_0919 0.81 +0.3
921,161 - EX28DRAFT_0919 0.82 -1.7
921,161 - EX28DRAFT_0919 0.82 -1.9
921,161 - EX28DRAFT_0919 0.82 +0.4
921,166 + EX28DRAFT_0919 0.83 +0.3

Or see this region's nucleotide sequence