Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0904 and EX28DRAFT_0905 are separated by 86 nucleotides EX28DRAFT_0905 and EX28DRAFT_0906 overlap by 4 nucleotides EX28DRAFT_0906 and EX28DRAFT_0907 are separated by 10 nucleotides
EX28DRAFT_0904: EX28DRAFT_0904 - hypothetical protein, at 907,634 to 908,713
_0904
EX28DRAFT_0905: EX28DRAFT_0905 - phage baseplate assembly protein V, at 908,800 to 909,435
_0905
EX28DRAFT_0906: EX28DRAFT_0906 - Phage baseplate assembly protein W, at 909,432 to 909,776
_0906
EX28DRAFT_0907: EX28DRAFT_0907 - Phage-related baseplate assembly protein, at 909,787 to 910,695
_0907
Position (kb) 908
909
910 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 907.897 kb on - strand, within EX28DRAFT_0904 at 908.219 kb on - strand, within EX28DRAFT_0904 at 908.307 kb on + strand, within EX28DRAFT_0904 at 908.632 kb on + strand at 908.645 kb on - strand at 908.707 kb on + strand at 908.725 kb on - strand at 908.811 kb on + strand at 908.811 kb on + strand at 908.812 kb on - strand at 909.128 kb on - strand, within EX28DRAFT_0905 at 909.243 kb on + strand, within EX28DRAFT_0905 at 909.244 kb on - strand, within EX28DRAFT_0905 at 909.444 kb on + strand at 909.476 kb on + strand, within EX28DRAFT_0906 at 909.494 kb on + strand, within EX28DRAFT_0906 at 909.713 kb on + strand, within EX28DRAFT_0906 at 909.713 kb on + strand, within EX28DRAFT_0906 at 909.714 kb on - strand, within EX28DRAFT_0906 at 909.805 kb on - strand at 909.844 kb on + strand at 909.845 kb on - strand at 909.845 kb on - strand at 909.913 kb on - strand, within EX28DRAFT_0907 at 909.956 kb on + strand, within EX28DRAFT_0907 at 909.957 kb on - strand, within EX28DRAFT_0907 at 910.034 kb on - strand, within EX28DRAFT_0907 at 910.062 kb on - strand, within EX28DRAFT_0907 at 910.429 kb on + strand, within EX28DRAFT_0907 at 910.432 kb on - strand, within EX28DRAFT_0907
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 907,897 - EX28DRAFT_0904 0.24 +0.2 908,219 - EX28DRAFT_0904 0.54 +0.8 908,307 + EX28DRAFT_0904 0.62 -0.2 908,632 + +0.4 908,645 - -0.1 908,707 + +0.1 908,725 - -5.4 908,811 + -0.4 908,811 + +0.5 908,812 - -0.5 909,128 - EX28DRAFT_0905 0.52 +0.1 909,243 + EX28DRAFT_0905 0.70 +2.1 909,244 - EX28DRAFT_0905 0.70 +0.4 909,444 + -0.1 909,476 + EX28DRAFT_0906 0.13 -0.2 909,494 + EX28DRAFT_0906 0.18 -0.2 909,713 + EX28DRAFT_0906 0.81 +1.1 909,713 + EX28DRAFT_0906 0.81 +0.3 909,714 - EX28DRAFT_0906 0.82 -0.5 909,805 - -0.7 909,844 + -0.6 909,845 - -0.5 909,845 - -2.2 909,913 - EX28DRAFT_0907 0.14 +0.1 909,956 + EX28DRAFT_0907 0.19 +0.3 909,957 - EX28DRAFT_0907 0.19 +0.4 910,034 - EX28DRAFT_0907 0.27 +0.4 910,062 - EX28DRAFT_0907 0.30 +1.1 910,429 + EX28DRAFT_0907 0.71 -0.3 910,432 - EX28DRAFT_0907 0.71 +0.3
Or see this region's nucleotide sequence