Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0820

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0819 and EX28DRAFT_0820 are separated by 394 nucleotidesEX28DRAFT_0820 and EX28DRAFT_0821 are separated by 54 nucleotides EX28DRAFT_0819: EX28DRAFT_0819 - hypothetical protein, at 823,956 to 824,474 _0819 EX28DRAFT_0820: EX28DRAFT_0820 - Uncharacterized protein conserved in bacteria, at 824,869 to 825,162 _0820 EX28DRAFT_0821: EX28DRAFT_0821 - GTP-binding protein YchF, at 825,217 to 826,311 _0821 Position (kb) 824 825 826Strain fitness (log2 ratio) -1 0 1at 823.869 kb on + strandat 823.968 kb on - strandat 823.991 kb on - strandat 824.447 kb on + strandat 824.608 kb on - strandat 824.687 kb on + strandat 824.734 kb on + strandat 824.789 kb on + strandat 824.903 kb on + strand, within EX28DRAFT_0820at 824.933 kb on + strand, within EX28DRAFT_0820at 824.933 kb on + strand, within EX28DRAFT_0820at 825.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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823,869 + +1.2
823,968 - -1.1
823,991 - +0.5
824,447 + -0.7
824,608 - -0.6
824,687 + -0.6
824,734 + -0.5
824,789 + -0.3
824,903 + EX28DRAFT_0820 0.12 +0.3
824,933 + EX28DRAFT_0820 0.22 +1.0
824,933 + EX28DRAFT_0820 0.22 +0.1
825,321 - -1.2

Or see this region's nucleotide sequence