Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0816 and EX28DRAFT_0817 are separated by 89 nucleotides EX28DRAFT_0817 and EX28DRAFT_0818 are separated by 170 nucleotides EX28DRAFT_0818 and EX28DRAFT_0819 are separated by 272 nucleotides
EX28DRAFT_0816: EX28DRAFT_0816 - Anaphase-promoting complex, cyclosome, subunit 3, at 822,049 to 822,468
_0816
EX28DRAFT_0817: EX28DRAFT_0817 - SMI1 / KNR4 family (SUKH-1), at 822,558 to 823,040
_0817
EX28DRAFT_0818: EX28DRAFT_0818 - hypothetical protein, at 823,211 to 823,683
_0818
EX28DRAFT_0819: EX28DRAFT_0819 - hypothetical protein, at 823,956 to 824,474
_0819
Position (kb) 823
824 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 822.219 kb on + strand, within EX28DRAFT_0816 at 822.393 kb on + strand, within EX28DRAFT_0816 at 822.489 kb on - strand at 823.058 kb on - strand at 823.246 kb on + strand at 823.316 kb on - strand, within EX28DRAFT_0818 at 823.346 kb on + strand, within EX28DRAFT_0818 at 823.579 kb on + strand, within EX28DRAFT_0818 at 823.618 kb on - strand, within EX28DRAFT_0818 at 823.785 kb on + strand at 823.869 kb on + strand at 823.968 kb on - strand at 823.991 kb on - strand at 824.447 kb on + strand at 824.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 822,219 + EX28DRAFT_0816 0.40 -0.1 822,393 + EX28DRAFT_0816 0.82 -0.7 822,489 - -0.1 823,058 - +3.7 823,246 + -0.1 823,316 - EX28DRAFT_0818 0.22 -1.6 823,346 + EX28DRAFT_0818 0.29 +0.3 823,579 + EX28DRAFT_0818 0.78 -1.3 823,618 - EX28DRAFT_0818 0.86 -1.6 823,785 + -1.8 823,869 + +1.2 823,968 - -1.1 823,991 - +0.5 824,447 + -0.7 824,608 - -0.6
Or see this region's nucleotide sequence