Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0768 and EX28DRAFT_0769 are separated by 97 nucleotides EX28DRAFT_0769 and EX28DRAFT_0770 are separated by 107 nucleotides EX28DRAFT_0770 and EX28DRAFT_0771 are separated by 37 nucleotides
EX28DRAFT_0768: EX28DRAFT_0768 - NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain, at 765,065 to 766,798
_0768
EX28DRAFT_0769: EX28DRAFT_0769 - Uncharacterized proteins, homologs of microcin C7 resistance protein MccF, at 766,896 to 767,810
_0769
EX28DRAFT_0770: EX28DRAFT_0770 - Transglycosylase SLT domain, at 767,918 to 768,529
_0770
EX28DRAFT_0771: EX28DRAFT_0771 - Predicted glycosyltransferase, at 768,567 to 769,298
_0771
Position (kb) 766
767
768 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 766.018 kb on + strand, within EX28DRAFT_0768 at 766.228 kb on + strand, within EX28DRAFT_0768 at 766.229 kb on - strand, within EX28DRAFT_0768 at 766.232 kb on + strand, within EX28DRAFT_0768 at 766.288 kb on + strand, within EX28DRAFT_0768 at 766.289 kb on - strand, within EX28DRAFT_0768 at 766.445 kb on - strand, within EX28DRAFT_0768 at 766.627 kb on - strand at 766.643 kb on - strand at 766.699 kb on + strand at 766.699 kb on + strand at 766.699 kb on + strand at 766.699 kb on + strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.703 kb on + strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.731 kb on - strand at 766.807 kb on + strand at 766.808 kb on - strand at 766.837 kb on - strand at 766.849 kb on + strand at 766.850 kb on - strand at 766.850 kb on - strand at 766.853 kb on - strand at 766.873 kb on - strand at 766.873 kb on - strand at 766.883 kb on + strand at 766.883 kb on + strand at 766.883 kb on + strand at 766.897 kb on + strand at 767.172 kb on + strand, within EX28DRAFT_0769 at 767.173 kb on - strand, within EX28DRAFT_0769 at 767.836 kb on + strand at 767.837 kb on - strand at 767.844 kb on + strand at 767.844 kb on + strand at 767.844 kb on + strand at 767.844 kb on + strand at 767.845 kb on - strand at 767.858 kb on + strand at 767.860 kb on + strand at 767.861 kb on - strand at 767.861 kb on - strand at 767.861 kb on - strand at 767.904 kb on + strand at 767.910 kb on + strand at 767.910 kb on + strand at 767.911 kb on - strand at 767.911 kb on - strand at 768.200 kb on + strand, within EX28DRAFT_0770 at 768.200 kb on + strand, within EX28DRAFT_0770 at 768.286 kb on + strand, within EX28DRAFT_0770 at 768.336 kb on - strand, within EX28DRAFT_0770 at 768.491 kb on + strand at 768.493 kb on + strand at 768.494 kb on - strand at 768.528 kb on - strand at 768.528 kb on - strand at 768.528 kb on - strand at 768.528 kb on - strand at 768.614 kb on - strand at 768.618 kb on - strand at 768.751 kb on + strand, within EX28DRAFT_0771
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 766,018 + EX28DRAFT_0768 0.55 +0.6 766,228 + EX28DRAFT_0768 0.67 -0.6 766,229 - EX28DRAFT_0768 0.67 +0.2 766,232 + EX28DRAFT_0768 0.67 -0.2 766,288 + EX28DRAFT_0768 0.71 -0.6 766,289 - EX28DRAFT_0768 0.71 +0.3 766,445 - EX28DRAFT_0768 0.80 -1.2 766,627 - +0.2 766,643 - +0.7 766,699 + -0.6 766,699 + +0.8 766,699 + +0.5 766,699 + -1.1 766,700 - -0.5 766,700 - +0.5 766,700 - -0.3 766,700 - -0.2 766,700 - -0.5 766,703 + +0.4 766,704 - -0.3 766,704 - -0.6 766,704 - -0.5 766,731 - -0.4 766,807 + +0.2 766,808 - -1.4 766,837 - -0.2 766,849 + -1.0 766,850 - -0.1 766,850 - +0.4 766,853 - +0.9 766,873 - -0.1 766,873 - +0.4 766,883 + +0.2 766,883 + +0.1 766,883 + +0.2 766,897 + -1.0 767,172 + EX28DRAFT_0769 0.30 -4.0 767,173 - EX28DRAFT_0769 0.30 -3.7 767,836 + -1.8 767,837 - +0.1 767,844 + -0.6 767,844 + -0.3 767,844 + -0.3 767,844 + -0.1 767,845 - -0.3 767,858 + +0.1 767,860 + +0.6 767,861 - -0.3 767,861 - -0.9 767,861 - +0.2 767,904 + +0.3 767,910 + -0.5 767,910 + +1.7 767,911 - -0.7 767,911 - -0.6 768,200 + EX28DRAFT_0770 0.46 +2.1 768,200 + EX28DRAFT_0770 0.46 -0.7 768,286 + EX28DRAFT_0770 0.60 +0.6 768,336 - EX28DRAFT_0770 0.68 -0.7 768,491 + +0.5 768,493 + -0.3 768,494 - -0.3 768,528 - -1.1 768,528 - +0.5 768,528 - -0.2 768,528 - -1.5 768,614 - -0.1 768,618 - +0.5 768,751 + EX28DRAFT_0771 0.25 -0.1
Or see this region's nucleotide sequence