Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0767 and EX28DRAFT_0768 are separated by 94 nucleotides EX28DRAFT_0768 and EX28DRAFT_0769 are separated by 97 nucleotides
EX28DRAFT_0767: EX28DRAFT_0767 - alanine racemase, at 763,900 to 764,970
_0767
EX28DRAFT_0768: EX28DRAFT_0768 - NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain, at 765,065 to 766,798
_0768
EX28DRAFT_0769: EX28DRAFT_0769 - Uncharacterized proteins, homologs of microcin C7 resistance protein MccF, at 766,896 to 767,810
_0769
Position (kb) 765
766
767 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 764.180 kb on - strand, within EX28DRAFT_0767 at 764.180 kb on - strand, within EX28DRAFT_0767 at 764.257 kb on - strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.260 kb on + strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.261 kb on - strand, within EX28DRAFT_0767 at 764.316 kb on + strand, within EX28DRAFT_0767 at 764.404 kb on - strand, within EX28DRAFT_0767 at 764.506 kb on + strand, within EX28DRAFT_0767 at 764.508 kb on + strand, within EX28DRAFT_0767 at 764.536 kb on + strand, within EX28DRAFT_0767 at 764.536 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.795 kb on + strand, within EX28DRAFT_0767 at 764.796 kb on - strand, within EX28DRAFT_0767 at 764.799 kb on + strand, within EX28DRAFT_0767 at 764.799 kb on + strand, within EX28DRAFT_0767 at 764.806 kb on - strand, within EX28DRAFT_0767 at 765.516 kb on - strand, within EX28DRAFT_0768 at 765.516 kb on - strand, within EX28DRAFT_0768 at 766.018 kb on + strand, within EX28DRAFT_0768 at 766.228 kb on + strand, within EX28DRAFT_0768 at 766.229 kb on - strand, within EX28DRAFT_0768 at 766.232 kb on + strand, within EX28DRAFT_0768 at 766.288 kb on + strand, within EX28DRAFT_0768 at 766.289 kb on - strand, within EX28DRAFT_0768 at 766.445 kb on - strand, within EX28DRAFT_0768 at 766.627 kb on - strand at 766.643 kb on - strand at 766.699 kb on + strand at 766.699 kb on + strand at 766.699 kb on + strand at 766.699 kb on + strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.700 kb on - strand at 766.703 kb on + strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.731 kb on - strand at 766.807 kb on + strand at 766.808 kb on - strand at 766.837 kb on - strand at 766.849 kb on + strand at 766.850 kb on - strand at 766.850 kb on - strand at 766.853 kb on - strand at 766.873 kb on - strand at 766.873 kb on - strand at 766.883 kb on + strand at 766.883 kb on + strand at 766.883 kb on + strand at 766.897 kb on + strand at 767.172 kb on + strand, within EX28DRAFT_0769 at 767.173 kb on - strand, within EX28DRAFT_0769
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 764,180 - EX28DRAFT_0767 0.26 -0.5 764,180 - EX28DRAFT_0767 0.26 -1.2 764,257 - EX28DRAFT_0767 0.33 -0.1 764,260 + EX28DRAFT_0767 0.34 +1.8 764,260 + EX28DRAFT_0767 0.34 -0.1 764,260 + EX28DRAFT_0767 0.34 -0.6 764,260 + EX28DRAFT_0767 0.34 -0.1 764,261 - EX28DRAFT_0767 0.34 -0.5 764,261 - EX28DRAFT_0767 0.34 -0.7 764,261 - EX28DRAFT_0767 0.34 -0.0 764,261 - EX28DRAFT_0767 0.34 -2.0 764,316 + EX28DRAFT_0767 0.39 +0.3 764,404 - EX28DRAFT_0767 0.47 -1.5 764,506 + EX28DRAFT_0767 0.57 -0.2 764,508 + EX28DRAFT_0767 0.57 +0.0 764,536 + EX28DRAFT_0767 0.59 +1.2 764,536 + EX28DRAFT_0767 0.59 -0.4 764,795 + EX28DRAFT_0767 0.84 +0.6 764,795 + EX28DRAFT_0767 0.84 +0.8 764,795 + EX28DRAFT_0767 0.84 +0.3 764,796 - EX28DRAFT_0767 0.84 -0.7 764,799 + EX28DRAFT_0767 0.84 +1.5 764,799 + EX28DRAFT_0767 0.84 -0.5 764,806 - EX28DRAFT_0767 0.85 -0.8 765,516 - EX28DRAFT_0768 0.26 +4.2 765,516 - EX28DRAFT_0768 0.26 +1.0 766,018 + EX28DRAFT_0768 0.55 +0.6 766,228 + EX28DRAFT_0768 0.67 -0.6 766,229 - EX28DRAFT_0768 0.67 +0.2 766,232 + EX28DRAFT_0768 0.67 -0.2 766,288 + EX28DRAFT_0768 0.71 -0.6 766,289 - EX28DRAFT_0768 0.71 +0.3 766,445 - EX28DRAFT_0768 0.80 -1.2 766,627 - +0.2 766,643 - +0.7 766,699 + -0.6 766,699 + +0.8 766,699 + +0.5 766,699 + -1.1 766,700 - -0.5 766,700 - +0.5 766,700 - -0.3 766,700 - -0.2 766,700 - -0.5 766,703 + +0.4 766,704 - -0.3 766,704 - -0.6 766,704 - -0.5 766,731 - -0.4 766,807 + +0.2 766,808 - -1.4 766,837 - -0.2 766,849 + -1.0 766,850 - -0.1 766,850 - +0.4 766,853 - +0.9 766,873 - -0.1 766,873 - +0.4 766,883 + +0.2 766,883 + +0.1 766,883 + +0.2 766,897 + -1.0 767,172 + EX28DRAFT_0769 0.30 -4.0 767,173 - EX28DRAFT_0769 0.30 -3.7
Or see this region's nucleotide sequence