Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0763 and EX28DRAFT_0764 are separated by 200 nucleotides EX28DRAFT_0764 and EX28DRAFT_0765 are separated by 69 nucleotides EX28DRAFT_0765 and EX28DRAFT_0766 are separated by 321 nucleotides
EX28DRAFT_0763: EX28DRAFT_0763 - Na+/H+ antiporter NhaB, at 758,210 to 759,748
_0763
EX28DRAFT_0764: EX28DRAFT_0764 - fatty acid metabolism transcriptional regulator FadR, at 759,949 to 760,668
_0764
EX28DRAFT_0765: EX28DRAFT_0765 - Uncharacterized conserved protein, at 760,738 to 762,270
_0765
EX28DRAFT_0766: EX28DRAFT_0766 - Glycine/D-amino acid oxidases (deaminating), at 762,592 to 763,890
_0766
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 759.771 kb on + strand at 759.787 kb on + strand at 759.787 kb on + strand at 759.787 kb on + strand at 759.831 kb on - strand at 759.881 kb on + strand at 759.905 kb on - strand at 759.923 kb on + strand at 759.958 kb on - strand at 759.991 kb on + strand at 760.384 kb on + strand, within EX28DRAFT_0764 at 760.462 kb on + strand, within EX28DRAFT_0764 at 760.525 kb on + strand, within EX28DRAFT_0764 at 760.525 kb on + strand, within EX28DRAFT_0764 at 760.526 kb on - strand, within EX28DRAFT_0764 at 760.530 kb on + strand, within EX28DRAFT_0764 at 760.740 kb on - strand at 760.747 kb on - strand at 760.896 kb on - strand, within EX28DRAFT_0765 at 760.896 kb on - strand, within EX28DRAFT_0765 at 760.973 kb on + strand, within EX28DRAFT_0765 at 761.043 kb on - strand, within EX28DRAFT_0765 at 761.043 kb on - strand, within EX28DRAFT_0765 at 761.235 kb on + strand, within EX28DRAFT_0765 at 761.378 kb on + strand, within EX28DRAFT_0765 at 761.399 kb on + strand, within EX28DRAFT_0765 at 761.399 kb on + strand, within EX28DRAFT_0765 at 761.400 kb on - strand, within EX28DRAFT_0765 at 761.538 kb on - strand, within EX28DRAFT_0765 at 761.648 kb on + strand, within EX28DRAFT_0765 at 761.649 kb on - strand, within EX28DRAFT_0765 at 761.712 kb on - strand, within EX28DRAFT_0765 at 761.800 kb on - strand, within EX28DRAFT_0765 at 761.804 kb on + strand, within EX28DRAFT_0765 at 761.804 kb on + strand, within EX28DRAFT_0765 at 761.804 kb on + strand, within EX28DRAFT_0765 at 761.805 kb on - strand, within EX28DRAFT_0765 at 761.867 kb on + strand, within EX28DRAFT_0765 at 761.872 kb on - strand, within EX28DRAFT_0765 at 761.950 kb on + strand, within EX28DRAFT_0765 at 761.950 kb on + strand, within EX28DRAFT_0765 at 761.951 kb on - strand, within EX28DRAFT_0765 at 761.955 kb on - strand, within EX28DRAFT_0765 at 761.977 kb on - strand, within EX28DRAFT_0765 at 761.990 kb on + strand, within EX28DRAFT_0765 at 762.015 kb on + strand, within EX28DRAFT_0765 at 762.015 kb on + strand, within EX28DRAFT_0765 at 762.015 kb on + strand, within EX28DRAFT_0765 at 762.016 kb on - strand, within EX28DRAFT_0765 at 762.016 kb on - strand, within EX28DRAFT_0765 at 762.016 kb on - strand, within EX28DRAFT_0765 at 762.017 kb on + strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.018 kb on - strand, within EX28DRAFT_0765 at 762.069 kb on + strand, within EX28DRAFT_0765 at 762.069 kb on + strand, within EX28DRAFT_0765 at 762.070 kb on - strand, within EX28DRAFT_0765 at 762.070 kb on - strand, within EX28DRAFT_0765 at 762.070 kb on - strand, within EX28DRAFT_0765 at 762.117 kb on + strand at 762.118 kb on - strand at 762.145 kb on - strand at 762.189 kb on - strand at 762.325 kb on + strand at 762.325 kb on + strand at 762.325 kb on + strand at 762.495 kb on + strand at 762.495 kb on + strand at 762.579 kb on + strand at 762.579 kb on + strand at 762.605 kb on + strand at 762.606 kb on - strand at 762.644 kb on - strand at 762.644 kb on - strand at 762.647 kb on + strand at 762.647 kb on + strand at 762.647 kb on + strand at 762.647 kb on + strand at 762.648 kb on - strand at 762.648 kb on - strand at 762.668 kb on + strand at 762.893 kb on - strand, within EX28DRAFT_0766 at 762.931 kb on + strand, within EX28DRAFT_0766 at 763.143 kb on + strand, within EX28DRAFT_0766 at 763.201 kb on - strand, within EX28DRAFT_0766
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 759,771 + -0.0 759,787 + +0.8 759,787 + -0.1 759,787 + -0.1 759,831 - -3.0 759,881 + +0.5 759,905 - -0.9 759,923 + +0.3 759,958 - -1.9 759,991 + -2.0 760,384 + EX28DRAFT_0764 0.60 -0.4 760,462 + EX28DRAFT_0764 0.71 -0.7 760,525 + EX28DRAFT_0764 0.80 -1.3 760,525 + EX28DRAFT_0764 0.80 -4.0 760,526 - EX28DRAFT_0764 0.80 -2.5 760,530 + EX28DRAFT_0764 0.81 -2.8 760,740 - -0.3 760,747 - +0.1 760,896 - EX28DRAFT_0765 0.10 -1.4 760,896 - EX28DRAFT_0765 0.10 -1.3 760,973 + EX28DRAFT_0765 0.15 +0.3 761,043 - EX28DRAFT_0765 0.20 -1.1 761,043 - EX28DRAFT_0765 0.20 -1.4 761,235 + EX28DRAFT_0765 0.32 -0.9 761,378 + EX28DRAFT_0765 0.42 -0.5 761,399 + EX28DRAFT_0765 0.43 -0.6 761,399 + EX28DRAFT_0765 0.43 -1.7 761,400 - EX28DRAFT_0765 0.43 -0.6 761,538 - EX28DRAFT_0765 0.52 +1.4 761,648 + EX28DRAFT_0765 0.59 -0.6 761,649 - EX28DRAFT_0765 0.59 -2.5 761,712 - EX28DRAFT_0765 0.64 -0.8 761,800 - EX28DRAFT_0765 0.69 -2.5 761,804 + EX28DRAFT_0765 0.70 -2.0 761,804 + EX28DRAFT_0765 0.70 -1.1 761,804 + EX28DRAFT_0765 0.70 -1.7 761,805 - EX28DRAFT_0765 0.70 -1.9 761,867 + EX28DRAFT_0765 0.74 -0.7 761,872 - EX28DRAFT_0765 0.74 -0.7 761,950 + EX28DRAFT_0765 0.79 -0.8 761,950 + EX28DRAFT_0765 0.79 -1.5 761,951 - EX28DRAFT_0765 0.79 -2.1 761,955 - EX28DRAFT_0765 0.79 -1.5 761,977 - EX28DRAFT_0765 0.81 -1.2 761,990 + EX28DRAFT_0765 0.82 -0.5 762,015 + EX28DRAFT_0765 0.83 -2.6 762,015 + EX28DRAFT_0765 0.83 -1.0 762,015 + EX28DRAFT_0765 0.83 -1.5 762,016 - EX28DRAFT_0765 0.83 -2.1 762,016 - EX28DRAFT_0765 0.83 -1.2 762,016 - EX28DRAFT_0765 0.83 -2.0 762,017 + EX28DRAFT_0765 0.83 +0.0 762,018 - EX28DRAFT_0765 0.83 -0.4 762,018 - EX28DRAFT_0765 0.83 -0.7 762,018 - EX28DRAFT_0765 0.83 -1.2 762,018 - EX28DRAFT_0765 0.83 +1.5 762,018 - EX28DRAFT_0765 0.83 +2.1 762,069 + EX28DRAFT_0765 0.87 -3.5 762,069 + EX28DRAFT_0765 0.87 -0.9 762,070 - EX28DRAFT_0765 0.87 -1.1 762,070 - EX28DRAFT_0765 0.87 +0.7 762,070 - EX28DRAFT_0765 0.87 +1.3 762,117 + +0.5 762,118 - -1.0 762,145 - -1.3 762,189 - -0.7 762,325 + -0.1 762,325 + -0.4 762,325 + -0.7 762,495 + -0.7 762,495 + +0.4 762,579 + -0.4 762,579 + +0.4 762,605 + -0.8 762,606 - -1.0 762,644 - +0.8 762,644 - +0.0 762,647 + +0.4 762,647 + +0.6 762,647 + +0.1 762,647 + -0.0 762,648 - -1.4 762,648 - -0.4 762,668 + +0.4 762,893 - EX28DRAFT_0766 0.23 -0.0 762,931 + EX28DRAFT_0766 0.26 +0.6 763,143 + EX28DRAFT_0766 0.42 +0.6 763,201 - EX28DRAFT_0766 0.47 -0.3
Or see this region's nucleotide sequence