Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0724 and EX28DRAFT_0725 are separated by 96 nucleotides EX28DRAFT_0725 and EX28DRAFT_0726 are separated by 19 nucleotides EX28DRAFT_0726 and EX28DRAFT_0727 are separated by 193 nucleotides
EX28DRAFT_0724: EX28DRAFT_0724 - GAF domain-containing protein, at 722,873 to 723,370
_0724
EX28DRAFT_0725: EX28DRAFT_0725 - Activator of osmoprotectant transporter ProP, at 723,467 to 724,153
_0725
EX28DRAFT_0726: EX28DRAFT_0726 - C-terminal peptidase (prc), at 724,173 to 726,221
_0726
EX28DRAFT_0727: EX28DRAFT_0727 - Zn-dependent protease with chaperone function, at 726,415 to 727,296
_0727
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 723.268 kb on + strand, within EX28DRAFT_0724 at 723.321 kb on + strand at 723.369 kb on - strand at 723.384 kb on + strand at 723.384 kb on + strand at 723.406 kb on + strand at 723.407 kb on - strand at 723.408 kb on + strand at 723.452 kb on + strand at 723.452 kb on + strand at 723.481 kb on + strand at 723.658 kb on + strand, within EX28DRAFT_0725 at 723.681 kb on - strand, within EX28DRAFT_0725 at 723.880 kb on + strand, within EX28DRAFT_0725 at 724.054 kb on + strand, within EX28DRAFT_0725 at 724.583 kb on + strand, within EX28DRAFT_0726 at 725.485 kb on - strand, within EX28DRAFT_0726 at 725.562 kb on + strand, within EX28DRAFT_0726 at 725.640 kb on + strand, within EX28DRAFT_0726 at 725.844 kb on + strand, within EX28DRAFT_0726 at 726.199 kb on + strand at 726.220 kb on - strand at 726.322 kb on + strand at 726.479 kb on + strand at 726.633 kb on + strand, within EX28DRAFT_0727 at 726.654 kb on + strand, within EX28DRAFT_0727 at 726.654 kb on + strand, within EX28DRAFT_0727 at 726.655 kb on - strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 723,268 + EX28DRAFT_0724 0.79 +0.5 723,321 + -0.2 723,369 - -0.9 723,384 + +3.3 723,384 + -0.6 723,406 + +0.6 723,407 - -0.9 723,408 + +0.5 723,452 + +0.5 723,452 + -0.2 723,481 + -1.6 723,658 + EX28DRAFT_0725 0.28 -0.7 723,681 - EX28DRAFT_0725 0.31 -1.5 723,880 + EX28DRAFT_0725 0.60 +2.5 724,054 + EX28DRAFT_0725 0.85 +1.3 724,583 + EX28DRAFT_0726 0.20 -2.8 725,485 - EX28DRAFT_0726 0.64 -0.4 725,562 + EX28DRAFT_0726 0.68 -0.8 725,640 + EX28DRAFT_0726 0.72 -1.5 725,844 + EX28DRAFT_0726 0.82 -0.8 726,199 + +1.2 726,220 - -2.5 726,322 + +0.0 726,479 + -0.1 726,633 + EX28DRAFT_0727 0.25 -0.5 726,654 + EX28DRAFT_0727 0.27 -0.3 726,654 + EX28DRAFT_0727 0.27 +0.2 726,655 - EX28DRAFT_0727 0.27 -0.1 727,159 + EX28DRAFT_0727 0.84 -0.5 727,159 + EX28DRAFT_0727 0.84 +1.1 727,159 + EX28DRAFT_0727 0.84 +0.1 727,159 + EX28DRAFT_0727 0.84 +0.4
Or see this region's nucleotide sequence