Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0714 and EX28DRAFT_0715 are separated by 16 nucleotides EX28DRAFT_0715 and EX28DRAFT_0716 are separated by 101 nucleotides EX28DRAFT_0716 and EX28DRAFT_0717 are separated by 193 nucleotides EX28DRAFT_0717 and EX28DRAFT_0718 are separated by 173 nucleotides
EX28DRAFT_0714: EX28DRAFT_0714 - Putative copper export protein, at 712,468 to 713,337
_0714
EX28DRAFT_0715: EX28DRAFT_0715 - Protein of unknown function (DUF2511), at 713,354 to 713,692
_0715
EX28DRAFT_0716: EX28DRAFT_0716 - RNA, at 713,794 to 713,938
_0716
EX28DRAFT_0717: EX28DRAFT_0717 - Glycosyltransferase family 17, at 714,132 to 715,028
_0717
EX28DRAFT_0718: EX28DRAFT_0718 - Uncharacterized protein conserved in bacteria, at 715,202 to 716,143
_0718
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1
2 at 713.181 kb on - strand, within EX28DRAFT_0714 at 713.344 kb on + strand at 713.345 kb on - strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.349 kb on - strand at 713.349 kb on - strand at 713.368 kb on - strand at 713.379 kb on + strand at 713.513 kb on + strand, within EX28DRAFT_0715 at 713.611 kb on + strand, within EX28DRAFT_0715 at 713.611 kb on + strand, within EX28DRAFT_0715 at 713.753 kb on + strand at 713.753 kb on + strand at 713.754 kb on - strand at 713.821 kb on - strand, within EX28DRAFT_0716 at 713.843 kb on + strand, within EX28DRAFT_0716 at 713.941 kb on - strand at 713.974 kb on - strand at 714.025 kb on + strand at 714.025 kb on + strand at 714.025 kb on + strand at 714.026 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.133 kb on + strand at 714.133 kb on + strand at 714.176 kb on - strand at 714.176 kb on - strand at 714.313 kb on - strand, within EX28DRAFT_0717 at 714.555 kb on - strand, within EX28DRAFT_0717 at 714.555 kb on - strand, within EX28DRAFT_0717 at 714.847 kb on + strand, within EX28DRAFT_0717 at 714.848 kb on - strand, within EX28DRAFT_0717 at 714.848 kb on - strand, within EX28DRAFT_0717 at 714.852 kb on - strand, within EX28DRAFT_0717 at 714.875 kb on - strand, within EX28DRAFT_0717 at 714.882 kb on - strand, within EX28DRAFT_0717 at 714.992 kb on + strand at 714.992 kb on + strand at 714.992 kb on + strand at 715.007 kb on - strand at 715.008 kb on + strand at 715.009 kb on - strand at 715.009 kb on - strand at 715.009 kb on - strand at 715.022 kb on - strand at 715.022 kb on - strand at 715.129 kb on + strand at 715.216 kb on + strand at 715.230 kb on - strand at 715.377 kb on + strand, within EX28DRAFT_0718 at 715.737 kb on + strand, within EX28DRAFT_0718 at 715.743 kb on - strand, within EX28DRAFT_0718 at 715.921 kb on + strand, within EX28DRAFT_0718 at 716.013 kb on - strand, within EX28DRAFT_0718
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 713,181 - EX28DRAFT_0714 0.82 +2.1 713,344 + -0.0 713,345 - -0.2 713,348 + -0.8 713,348 + +0.2 713,348 + -1.1 713,348 + +1.2 713,349 - +0.1 713,349 - -1.5 713,368 - -0.3 713,379 + -0.5 713,513 + EX28DRAFT_0715 0.47 -0.7 713,611 + EX28DRAFT_0715 0.76 +0.5 713,611 + EX28DRAFT_0715 0.76 -0.2 713,753 + +0.3 713,753 + -0.1 713,754 - -0.2 713,821 - EX28DRAFT_0716 0.19 +1.3 713,843 + EX28DRAFT_0716 0.34 -0.6 713,941 - -1.2 713,974 - +1.0 714,025 + -0.2 714,025 + -0.3 714,025 + -0.8 714,026 - +0.0 714,129 - -1.4 714,129 - +1.0 714,129 - -0.3 714,129 - +0.2 714,133 + +0.5 714,133 + +0.4 714,176 - -0.5 714,176 - -0.5 714,313 - EX28DRAFT_0717 0.20 +0.5 714,555 - EX28DRAFT_0717 0.47 -0.3 714,555 - EX28DRAFT_0717 0.47 +0.1 714,847 + EX28DRAFT_0717 0.80 -0.5 714,848 - EX28DRAFT_0717 0.80 -1.3 714,848 - EX28DRAFT_0717 0.80 -2.7 714,852 - EX28DRAFT_0717 0.80 -0.8 714,875 - EX28DRAFT_0717 0.83 -0.3 714,882 - EX28DRAFT_0717 0.84 -0.6 714,992 + -0.4 714,992 + +0.0 714,992 + -1.0 715,007 - -0.9 715,008 + -0.3 715,009 - -0.6 715,009 - +0.5 715,009 - -0.6 715,022 - -0.6 715,022 - -1.6 715,129 + -0.0 715,216 + -0.4 715,230 - +0.4 715,377 + EX28DRAFT_0718 0.19 -1.1 715,737 + EX28DRAFT_0718 0.57 -0.3 715,743 - EX28DRAFT_0718 0.57 +0.6 715,921 + EX28DRAFT_0718 0.76 -0.3 716,013 - EX28DRAFT_0718 0.86 -0.1
Or see this region's nucleotide sequence