Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0666

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0665 and EX28DRAFT_0666 are separated by 57 nucleotidesEX28DRAFT_0666 and EX28DRAFT_0667 are separated by 16 nucleotidesEX28DRAFT_0667 and EX28DRAFT_0668 overlap by 25 nucleotides EX28DRAFT_0665: EX28DRAFT_0665 - Uncharacterized secreted protein, at 660,384 to 660,956 _0665 EX28DRAFT_0666: EX28DRAFT_0666 - Uncharacterized secreted protein, at 661,014 to 661,517 _0666 EX28DRAFT_0667: EX28DRAFT_0667 - P pilus assembly protein, chaperone PapD, at 661,534 to 662,289 _0667 EX28DRAFT_0668: EX28DRAFT_0668 - P pilus assembly protein, porin PapC, at 662,265 to 664,649 _0668 Position (kb) 661 662Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 660.149 kb on - strandat 660.230 kb on + strandat 660.230 kb on + strandat 660.230 kb on + strandat 660.230 kb on + strandat 660.230 kb on + strandat 660.231 kb on - strandat 660.278 kb on + strandat 660.382 kb on - strandat 660.540 kb on - strand, within EX28DRAFT_0665at 660.591 kb on - strand, within EX28DRAFT_0665at 660.591 kb on - strand, within EX28DRAFT_0665at 660.591 kb on - strand, within EX28DRAFT_0665at 660.654 kb on + strand, within EX28DRAFT_0665at 660.654 kb on + strand, within EX28DRAFT_0665at 660.654 kb on + strand, within EX28DRAFT_0665at 660.655 kb on - strand, within EX28DRAFT_0665at 660.655 kb on - strand, within EX28DRAFT_0665at 660.655 kb on - strand, within EX28DRAFT_0665at 660.655 kb on - strand, within EX28DRAFT_0665at 660.656 kb on + strand, within EX28DRAFT_0665at 660.657 kb on - strand, within EX28DRAFT_0665at 660.658 kb on - strand, within EX28DRAFT_0665at 660.781 kb on - strand, within EX28DRAFT_0665at 660.861 kb on + strand, within EX28DRAFT_0665at 660.921 kb on + strandat 660.952 kb on - strandat 660.952 kb on - strandat 660.955 kb on - strandat 661.268 kb on + strand, within EX28DRAFT_0666at 661.408 kb on - strand, within EX28DRAFT_0666at 661.409 kb on + strand, within EX28DRAFT_0666at 661.515 kb on + strandat 661.519 kb on - strandat 661.754 kb on - strand, within EX28DRAFT_0667at 661.755 kb on + strand, within EX28DRAFT_0667at 661.756 kb on - strand, within EX28DRAFT_0667at 661.878 kb on + strand, within EX28DRAFT_0667at 661.991 kb on + strand, within EX28DRAFT_0667at 661.992 kb on - strand, within EX28DRAFT_0667at 662.248 kb on - strandat 662.305 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
660,149 - -0.8
660,230 + -0.5
660,230 + -0.1
660,230 + +1.2
660,230 + -0.1
660,230 + -5.4
660,231 - -1.0
660,278 + -1.0
660,382 - -1.0
660,540 - EX28DRAFT_0665 0.27 -0.1
660,591 - EX28DRAFT_0665 0.36 -0.1
660,591 - EX28DRAFT_0665 0.36 +1.7
660,591 - EX28DRAFT_0665 0.36 +3.5
660,654 + EX28DRAFT_0665 0.47 +3.1
660,654 + EX28DRAFT_0665 0.47 +1.6
660,654 + EX28DRAFT_0665 0.47 +0.2
660,655 - EX28DRAFT_0665 0.47 -0.5
660,655 - EX28DRAFT_0665 0.47 +0.3
660,655 - EX28DRAFT_0665 0.47 -0.2
660,655 - EX28DRAFT_0665 0.47 -1.8
660,656 + EX28DRAFT_0665 0.47 +0.7
660,657 - EX28DRAFT_0665 0.48 +0.2
660,658 - EX28DRAFT_0665 0.48 -0.6
660,781 - EX28DRAFT_0665 0.69 +1.0
660,861 + EX28DRAFT_0665 0.83 +0.0
660,921 + -0.5
660,952 - -1.3
660,952 - -2.3
660,955 - +0.4
661,268 + EX28DRAFT_0666 0.50 -1.0
661,408 - EX28DRAFT_0666 0.78 -1.3
661,409 + EX28DRAFT_0666 0.78 -0.8
661,515 + -0.1
661,519 - -0.1
661,754 - EX28DRAFT_0667 0.29 +0.8
661,755 + EX28DRAFT_0667 0.29 -0.3
661,756 - EX28DRAFT_0667 0.29 +1.2
661,878 + EX28DRAFT_0667 0.46 +0.4
661,991 + EX28DRAFT_0667 0.60 +0.5
661,992 - EX28DRAFT_0667 0.61 -1.0
662,248 - -0.7
662,305 + -0.1

Or see this region's nucleotide sequence