Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0582

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0580 and EX28DRAFT_0581 are separated by 92 nucleotidesEX28DRAFT_0581 and EX28DRAFT_0582 overlap by 26 nucleotidesEX28DRAFT_0582 and EX28DRAFT_0583 overlap by 4 nucleotides EX28DRAFT_0580: EX28DRAFT_0580 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 578,147 to 579,676 _0580 EX28DRAFT_0581: EX28DRAFT_0581 - Transcriptional regulator, at 579,769 to 580,668 _0581 EX28DRAFT_0582: EX28DRAFT_0582 - ABC-type molybdate transport system, periplasmic component, at 580,643 to 581,431 _0582 EX28DRAFT_0583: EX28DRAFT_0583 - metabolite-proton symporter, at 581,428 to 582,741 _0583 Position (kb) 580 581 582Strain fitness (log2 ratio) -1 0 1 2at 579.679 kb on + strandat 579.679 kb on + strandat 579.680 kb on - strandat 579.680 kb on - strandat 579.712 kb on + strandat 579.724 kb on - strandat 579.824 kb on - strandat 579.828 kb on + strandat 579.852 kb on + strandat 579.956 kb on + strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 580.091 kb on - strand, within EX28DRAFT_0581at 580.096 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.351 kb on + strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.353 kb on + strand, within EX28DRAFT_0581at 580.354 kb on - strand, within EX28DRAFT_0581at 580.472 kb on + strand, within EX28DRAFT_0581at 580.473 kb on - strand, within EX28DRAFT_0581at 580.615 kb on + strandat 580.615 kb on + strandat 580.722 kb on + strand, within EX28DRAFT_0582at 580.795 kb on - strand, within EX28DRAFT_0582at 580.795 kb on - strand, within EX28DRAFT_0582at 580.822 kb on + strand, within EX28DRAFT_0582at 580.878 kb on + strand, within EX28DRAFT_0582at 580.878 kb on + strand, within EX28DRAFT_0582at 580.986 kb on + strand, within EX28DRAFT_0582at 580.987 kb on - strand, within EX28DRAFT_0582at 581.186 kb on - strand, within EX28DRAFT_0582at 581.298 kb on + strand, within EX28DRAFT_0582at 581.299 kb on - strand, within EX28DRAFT_0582at 581.354 kb on + strandat 581.354 kb on + strandat 581.355 kb on - strandat 581.411 kb on - strandat 581.419 kb on - strandat 581.431 kb on + strandat 581.431 kb on + strandat 581.458 kb on - strandat 581.458 kb on - strandat 581.489 kb on + strandat 581.489 kb on + strandat 581.624 kb on + strand, within EX28DRAFT_0583at 581.664 kb on + strand, within EX28DRAFT_0583at 581.665 kb on - strand, within EX28DRAFT_0583at 581.665 kb on - strand, within EX28DRAFT_0583at 582.243 kb on + strand, within EX28DRAFT_0583at 582.244 kb on - strand, within EX28DRAFT_0583at 582.244 kb on - strand, within EX28DRAFT_0583at 582.281 kb on + strand, within EX28DRAFT_0583at 582.416 kb on + strand, within EX28DRAFT_0583at 582.416 kb on + strand, within EX28DRAFT_0583

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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579,679 + -0.6
579,679 + +0.5
579,680 - -0.3
579,680 - -0.7
579,712 + +0.3
579,724 - -1.0
579,824 - -0.1
579,828 + +0.3
579,852 + -0.7
579,956 + EX28DRAFT_0581 0.21 +0.1
579,957 - EX28DRAFT_0581 0.21 -0.4
579,957 - EX28DRAFT_0581 0.21 +0.5
579,957 - EX28DRAFT_0581 0.21 +0.4
580,091 - EX28DRAFT_0581 0.36 +0.6
580,096 - EX28DRAFT_0581 0.36 -0.0
580,147 - EX28DRAFT_0581 0.42 +0.3
580,147 - EX28DRAFT_0581 0.42 -1.0
580,147 - EX28DRAFT_0581 0.42 -0.7
580,273 + EX28DRAFT_0581 0.56 +0.1
580,273 + EX28DRAFT_0581 0.56 -0.4
580,273 + EX28DRAFT_0581 0.56 +0.4
580,274 - EX28DRAFT_0581 0.56 -0.6
580,274 - EX28DRAFT_0581 0.56 -0.7
580,274 - EX28DRAFT_0581 0.56 +0.5
580,274 - EX28DRAFT_0581 0.56 +0.4
580,274 - EX28DRAFT_0581 0.56 -0.1
580,351 + EX28DRAFT_0581 0.65 +1.4
580,352 - EX28DRAFT_0581 0.65 -0.2
580,352 - EX28DRAFT_0581 0.65 +1.1
580,352 - EX28DRAFT_0581 0.65 +0.2
580,352 - EX28DRAFT_0581 0.65 +0.1
580,353 + EX28DRAFT_0581 0.65 -0.5
580,354 - EX28DRAFT_0581 0.65 -0.2
580,472 + EX28DRAFT_0581 0.78 -0.8
580,473 - EX28DRAFT_0581 0.78 -0.5
580,615 + -1.0
580,615 + +0.4
580,722 + EX28DRAFT_0582 0.10 -0.6
580,795 - EX28DRAFT_0582 0.19 +0.9
580,795 - EX28DRAFT_0582 0.19 +0.1
580,822 + EX28DRAFT_0582 0.23 -1.1
580,878 + EX28DRAFT_0582 0.30 -0.6
580,878 + EX28DRAFT_0582 0.30 -0.5
580,986 + EX28DRAFT_0582 0.43 +0.3
580,987 - EX28DRAFT_0582 0.44 +0.1
581,186 - EX28DRAFT_0582 0.69 -0.1
581,298 + EX28DRAFT_0582 0.83 +0.6
581,299 - EX28DRAFT_0582 0.83 -0.6
581,354 + -0.2
581,354 + +0.6
581,355 - -1.1
581,411 - -0.3
581,419 - -1.3
581,431 + +1.0
581,431 + +0.7
581,458 - +0.4
581,458 - -0.0
581,489 + -0.3
581,489 + +0.4
581,624 + EX28DRAFT_0583 0.15 -0.4
581,664 + EX28DRAFT_0583 0.18 -0.7
581,665 - EX28DRAFT_0583 0.18 +0.3
581,665 - EX28DRAFT_0583 0.18 +0.4
582,243 + EX28DRAFT_0583 0.62 +0.7
582,244 - EX28DRAFT_0583 0.62 +0.9
582,244 - EX28DRAFT_0583 0.62 +1.9
582,281 + EX28DRAFT_0583 0.65 -1.1
582,416 + EX28DRAFT_0583 0.75 +0.5
582,416 + EX28DRAFT_0583 0.75 +0.7

Or see this region's nucleotide sequence